CX305764

Overview
NameCX305764
Unique NameCX305764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:508..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305764 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.049e-15
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = -2 
Query:   94 SGRWFITAGGLDGHPGARTLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVL 297
            +G+W++T  G+ G PG  TL +WFK+EK  + G YK   CPSVC+SC  LCS +GR S +DG  RL L
Sbjct:  131 AGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG-YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197
[Close]
BLAST of CX305764 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.796e-12
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = -2 
Query:   76 SGRWFITAGGLDGHPGARTLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRDDEP 297
            +G++F+T GG+ G+PG  T+ +WFK+E+    G YK+V CP+VC SC   C  VG +  + G RRL L   D+P
Sbjct:  138 TGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLAL--SDKP 209
The following BLAST results are available for this feature:
BLAST of CX305764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC5.049e-1551.4721 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.796e-1244.59Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
back to top
Properties
Property NameValue
Genbank descriptionC18010A03Rv Drought1 Citrus clementina cDNA clone C18010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305764 ID=CX305764; Name=CX305764; organism=Citrus clementina; type=EST; length=298bp
TGGTCGCCCGGGCAGGTACATTGATTACACAGACGTCGATCTTTCTCTAG
CTGGAATTAACACAACAGGAAAAGCCGGCTCATCATCACGAACCAAAACC
AGACGTCGAACGCCATCCTCAAACGAAAAGCGGCCAACGCTGCTGCATAG
TTTGACGCAAGACTCGCAAACAGATGGACAATGAACAATTTTGTATGCAC
CTGGTAGATTAGTTTTCTCAAGCTTAAACCAATTTAGCAACGTTCTAGCT
CCAGGGTGACCATCAAGCCCCCCGGCTGTTATAAACCATCTGCCTGAT
back to top