CX305786

Overview
NameCX305786
Unique NameCX305786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length334
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:262..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.151e-35
Identity = 69/110 (62.73%), Postives = 80/110 (72.73%), Query Frame = -3
Query:    9 GDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP--NYPC 332
            GD G L  II +  F+ LL++RND RCPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYC+ +E+      YCDP  NY C
Sbjct:   84 GDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINC--QPYCDPSSNYQC 191          
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.713e-35
Identity = 67/110 (60.91%), Postives = 81/110 (73.64%), Query Frame = -3
Query:    9 GDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 332
            G  G+L  IISR  F+D+L++RND  CPAR FYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYCF +E    SS+YC P+  +PC
Sbjct:   66 GPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQN-PSSNYCSPSAEWPC 174          
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.171e-34
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = -3
Query:    9 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 323
            G++G++I+R MF D+L++RN+  CP + FYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYC+ RE G+  + YC P+  +PC
Sbjct:   63 GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YCVPSAQWPC 168          
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.835e-34
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = -3
Query:    9 GGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 326
            GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC
Sbjct:   72 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPC 178          
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.835e-34
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = -3
Query:    9 GGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 326
            GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPC 183          
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 3.703e-34
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = -3
Query:    9 GDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 332
            G  G+L  IIS   F+D+L++RND  CPAR FYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYCF +E   A SDYC+P+  +PC
Sbjct:   81 GPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPA-SDYCEPSATWPC 189          
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.077e-33
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = -3
Query:    9 KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPC 311
            KIISR MF+ +L++RN+  CPA+ FYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYCF +E    SS+YC   P YPC
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERN-PSSNYCAPSPRYPC 105          
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.838e-33
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = -3
Query:    9 GDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPC 332
            GD G L  +I+R+ F+ +L +RND  CPAR FYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYC+NRE+  A  DYC  DPNYPC
Sbjct:   67 GDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPA--DYCQWDPNYPC 175          
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.400e-33
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = -3
Query:    9 GDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 332
            G GG+LG  IS  MF+ +L++RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G    DYC P+  +PC
Sbjct:   74 GPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERG-NPGDYCPPSSQWPC 182          
BLAST of CX305786 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.984e-33
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = -3
Query:    9 GDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 332
            G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC
Sbjct:   63 GPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPC 172          
The following BLAST results are available for this feature:
BLAST of CX305786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CHI6_POPTR1.151e-3562.73Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_BRANA5.713e-3560.91Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_VITVI2.171e-3460.75Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_TOBAC2.835e-3461.11Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC2.835e-3461.11Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIB_ARATH3.703e-3459.09Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_CARPA1.077e-3362.14Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_THECC1.838e-3361.61Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_SOLTU2.400e-3359.09Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_SOLTU6.984e-3359.46Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC18010C06Rv Drought1 Citrus clementina cDNA clone C18010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305786 ID=CX305786; Name=CX305786; organism=Citrus clementina; type=EST; length=334bp
TTCCCTCGACATGGATAGTTAGGATCACAGTAGTCGGACGACGCAGCGCC
AACTTCCCTATTAAAGCAATATCCCCAAGCATATTCGCCACCAGGTGCAT
CGGGCCATCCCCCAGTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCA
ATTTCTCTTTTACGCATGGTTTCATTTCCAGAATTACCAAAGGCTGGAAA
AGCTTTGGCTGCCTCTATAAAAGCATCATAAGTGTAGAAGCATCTGGCAG
GGCATCGTTTATCATTTCTATACTCAAGCAAGTCTTCAAACATCTTCCTT
GAGATGATCTTGCCCAGTTCACCGCCATCACCAG
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