CX306058

Overview
NameCX306058
Unique NameCX306058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig876 contig Ccv1_Contig876:1..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306058 vs. ExPASy Swiss-Prot
Match: AAP7_ARATH (Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.947e-34
Identity = 65/129 (50.39%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   28 PIFAHFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 408
            PIFA  E+ + +K+PEN F+   +  K PL+     R NP+R+C RT+YV+  T +A+ FPYFN+VLGV+G + FWPL +YFPVEM + Q  I +WTR W++LR FS+VC +V    LVGSI G++ AK
Sbjct:  337 PIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGAK 465          
BLAST of CX306058 vs. ExPASy Swiss-Prot
Match: AAP2_ARATH (Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.516e-29
Identity = 55/125 (44.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   28 PIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 399
            PIFA  EK + E++P+N FL+ EF ++ P     ++ N  R+ +R+ +VV+ T I+M  P+FN V+G++G + FWPLT+YFPVEMY+KQ  +E W+ +WV L++ S  C ++S    VGSI G++
Sbjct:  356 PIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVM 480          
BLAST of CX306058 vs. ExPASy Swiss-Prot
Match: AAP1_ARATH (Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.189e-28
Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   28 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 405
            PIF   EK     +P+N F+ +E+ +  P +  F  +  RL +RT YVV  T +AM FP+FN +LG+IG   FWPLT+YFPVEM++ Q  I+ ++ +W+ L+   YVC IVS     GSI G+IS+
Sbjct:  348 PIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLISS 473          
BLAST of CX306058 vs. ExPASy Swiss-Prot
Match: AAP5_ARATH (Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   22 CPPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPA--FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 402
            C P+FA  EK    +FPE+ F+  E  +K  L P   F  N  RL +RT +V++ T I+M  P+FN V+G++G + FWPLT+YFPVEMY+ Q N+  W  KWV L+V S  C  VS     GS+ GI+S
Sbjct:  342 CQPLFAFVEKEASRRFPESEFVTKE--IKIQLFPGKPFNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVS 468          
BLAST of CX306058 vs. ExPASy Swiss-Prot
Match: AAP3_ARATH (Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.420e-27
Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 1
Query:   22 CPPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 399
            C P+FA  EK    +FP++ F+  +  +  P     R N  RL +RTV+V+  T I+M  P+FN V+G++G + FWPLT+YFPVEMY+ Q  I  W+ +WV L+VFS  C +VS     GSI G++
Sbjct:  338 CQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVL 463          
BLAST of CX306058 vs. ExPASy Swiss-Prot
Match: AAP6_ARATH (Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.161e-27
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   22 CPPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 405
            C PIF   E    +++P+N F+  E+ +  P    F  N LRL +RT YVV    +AM FP+FN  LG+IG   FWPLT+YFP+EM++ Q  I  ++  W  L++ S+ CFIVS     GS+QG+I +
Sbjct:  344 CQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQS 471          
BLAST of CX306058 vs. ExPASy Swiss-Prot
Match: AAP8_ARATH (Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.041e-27
Identity = 55/126 (43.65%), Postives = 82/126 (65.08%), Query Frame = 1
Query:   28 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 405
            P F   E+   +K+P++ F+N E+  K PL+   R N  RL +RT YVV  T +AM FP+FN +LG++G   FWPLT+YFPV M++ Q  ++ ++R+W+ L +   VC IVS    VGSI G+I++
Sbjct:  339 PFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINS 464          
BLAST of CX306058 vs. ExPASy Swiss-Prot
Match: AAP4_ARATH (Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.591e-25
Identity = 50/125 (40.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query:   28 PIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 399
            PIFA  EK    +FP++  +  E+ ++ P     ++ N  R  +R+ +VV  T I+M  P+FN V+G++G + FWPLT+YFPVEMY++Q  +E W+ KWV L++ S  C +++    VGSI G++
Sbjct:  329 PIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVM 453          
The following BLAST results are available for this feature:
BLAST of CX306058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AAP7_ARATH5.947e-3450.39Probable amino acid permease 7 OS=Arabidopsis thal... [more]
AAP2_ARATH1.516e-2944.00Amino acid permease 2 OS=Arabidopsis thaliana GN=A... [more]
AAP1_ARATH2.189e-2844.44Amino acid permease 1 OS=Arabidopsis thaliana GN=A... [more]
AAP5_ARATH1.853e-2745.74Amino acid permease 5 OS=Arabidopsis thaliana GN=A... [more]
AAP3_ARATH2.420e-2743.65Amino acid permease 3 OS=Arabidopsis thaliana GN=A... [more]
AAP6_ARATH3.161e-2742.97Amino acid permease 6 OS=Arabidopsis thaliana GN=A... [more]
AAP8_ARATH7.041e-2743.65Amino acid permease 8 OS=Arabidopsis thaliana GN=A... [more]
AAP4_ARATH6.591e-2540.00Amino acid permease 4 OS=Arabidopsis thaliana GN=A... [more]
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Properties
Property NameValue
Genbank descriptionC18013E01Rv Drought1 Citrus clementina cDNA clone C18013E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306058 ID=CX306058; Name=CX306058; organism=Citrus clementina; type=EST; length=558bp
GCGGCGGGTGTCACGTTTATATGTCCGCCAATATTTGCCCATTTTGAAAA
ATGGATTTGTGAGAAGTTTCCAGAGAATGGATTCTTGAATAATGAGTTCT
TCTTGAAACCACCGCTGATGCCAGCTTTCAGATGGAACCCTCTGAGACTG
TGTTTCCGAACTGTTTATGTTGTGTCTGTGACGGCCATTGCAATGAGCTT
CCCTTACTTCAATCAGGTTCTAGGAGTGATAGGAGGAGTGATATTTTGGC
CCTTAACGATATACTTCCCTGTGGAGATGTACTTGAAGCAGATGAACATT
GAAGCTTGGACAAGAAAGTGGGTAATGCTTCGAGTTTTTAGCTACGTGTG
CTTCATTGTGTCAACTTTTGGGTTGGTCGGATCAATCCAAGGAATTATAA
GTGCAAAATTAAGCTAAGAAAAGGTACGGCTCATATAGGCTTATGTAATA
TAAGATGAATAATAGCTGATGATTTAGTGATGATGGATCAGATTTTATTG
GTCATGATGCAGGCATCTCTAAATTTTAATGGAGAAGCCATGTAATATAT
CAGTGTCT
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