CX306063

Overview
NameCX306063
Unique NameCX306063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig485 contig Ccv1_Contig485:141..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX306063 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.489e-13
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = -3 
Query:  266 NYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVSIYNLVHCPSVYDSCVKLCNKVG 442
            NY++S GKW++TT G+ G PG  TL +WFK+EK  V  Y    CPSV DSC  LC+ +G
Sbjct:  126 NYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLGYKFRFCPSVCDSCTTLCSDIG 184
The following BLAST results are available for this feature:
BLAST of CX306063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASP_THECC2.489e-1352.5421 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
back to top
Properties
Property NameValue
Genbank descriptionC18013E07Rv Drought1 Citrus clementina cDNA clone C18013E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306063 ID=CX306063; Name=CX306063; organism=Citrus clementina; type=EST; length=447bp
TTTTTTTTTTTTTTTTTTTTTTTGCACATAACAAAGTAGAAATTAACAGC
ATAAATATATCCCAGGCTAGCTAATTTATTTACTATTAATCATAGAGATT
AGAGTACTAGCTAGCCTGGTAAATTATTCAGAATATATAATATAGCTAGG
TAATTCATTACATAGAGGATCTTGAAGGATTAGGAGCTGGAAATAACACC
AACCGCAGAGGCTGATCATCATCACGAACCAGAACTAGACGTCGAACGCC
GTCCACATAGAAGATGCCGACTTTGTTACAGAGTTTAACGCAAGAATCGT
AAACAGATGGACAATGAACAAGATTGTATATACTGACACTAACTTTCTCA
AGCTTAAACCAATTTAGCAACGTTTTAGCTCCTGGGTGGCCGATGATTCC
GCCGGTTGTTAGAAACCATTTTCCTAATGAATCATTATAGTTTCCAA
back to top