CX306067

Overview
NameCX306067
Unique NameCX306067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig492 contig Ccv1_Contig492:77..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.910e-17
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L PCI+Y    GAV PACC+GI  +N  +KTT DR T CNC+K+ +A +PG+N +    LP  C    PYK++    C+ V
Sbjct:   29 CGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATV 116          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.910e-17
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L PCISY    GAV PACC G+ +LN+A+KTT DR   C C+K     I G+N     + P  C    PYK++   +CSKV
Sbjct:   28 CGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKV 115          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.626e-16
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QVT  L PC  Y    G V PACC+G+  LN A+KTT DR T C C+K   A    +N +  N+LP  C     YK+T +++CSK++
Sbjct:   28 CGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKIH 116          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.430e-16
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QVT  L PCI Y    GAV PACC+GI  +N  ++TT DR T CNC+K  A  I G+N +    LP  C    PYK++    C+ V
Sbjct:   27 CGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATV 114          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.479e-16
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L PCI+Y    GAV PACC+GI  +N  +KTT DR   CNC+K  A  + G+N     +LP  C    PYK++    C+ V
Sbjct:   27 CSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATV 114          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.702e-15
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L PCI Y    GAV PACC+GI  +N  ++TT DR   CNC+K+ +A +PG+N +    LP  C    PYK++    C+ V
Sbjct:    3 CGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATV 90          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.702e-15
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L PCI+Y    GAV PACC+GI  +N  ++TT DR   CNC+K+ +  IPG+N +    LP  C    PYK++    C+ V
Sbjct:    3 CGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATV 90          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.903e-15
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV   ++PC+SY         ACC G+ +LN+A+ TT DR T CNC+K  A  I GLN     ++P  C    PY ++  ++CS VN
Sbjct:   30 CGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.903e-15
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV   ++PC+SY         ACC G+ +LN+A+ TT DR T CNC+K  A  I GLN     ++P  C    PY ++  ++CS VN
Sbjct:   30 CGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.792e-15
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L PCI Y    GAV PACC+GI  +N  ++TT DR   CNC+K+ +A +PG+N +    LP  C    PY+++    C+ V
Sbjct:   29 CGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANV 116          
The following BLAST results are available for this feature:
BLAST of CX306067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NLTP_PRUAV6.910e-1745.45Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_HELAN6.910e-1745.45Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP_GERHY2.626e-1643.82Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP_MALDO3.430e-1645.45Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_PYRCO4.479e-1643.18Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUPE1.702e-1543.18Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUDO1.702e-1543.18Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP2_ORYSI2.903e-1540.45Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ2.903e-1540.45Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP1_PRUDU3.792e-1542.05Non-specific lipid-transfer protein 1 OS=Prunus du... [more]

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Properties
Property NameValue
Genbank descriptionC18013E12Rv Drought1 Citrus clementina cDNA clone C18013E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306067 ID=CX306067; Name=CX306067; organism=Citrus clementina; type=EST; length=397bp
GCGGGGATTGCATAAACCATAATTACAATGGCTGCTCAATTTCCAAAGGT
GCCATTAACAATGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCC
TGAATGCAGCAACAACAATAACATGCGAGCAAGTGACAATCTGGCTGACA
CCATGCATCAGCTATGGCGTAATGCGTGGGGCTGTTCAACCAGCTTGTTG
TGATGGCATTACAGCTTTGAATGCTGCTTCTAAAACCACAGAAGATAGAA
CGACCCTATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTC
AACTATGATCGTGTTAATACGCTTCCTGATATTTGCCGGAGTAAATGTCC
TTATAAACTTACACATGATCTTGAATGCTCTAAGGTGAACTAAATCT
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