CX306080

Overview
NameCX306080
Unique NameCX306080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length288
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.419e-16
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2
Query:  125 RTPYQHYHPVQIGWDLTAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQ 280
            R+ Y  Y+P  I WDL AASAF  TWDA+KPLAWRQKYGWTAFC   GP GQ
Sbjct:   32 RSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQ 83          
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.419e-16
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2
Query:  125 RTPYQHYHPVQIGWDLTAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQ 280
            R+ Y  Y+P  I WDL AASAF  TWDA+KPLAWRQKYGWTAFC   GP GQ
Sbjct:   32 RSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQ 83          
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.449e-15
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 2
Query:  125 RTPYQHYHPVQIGWDLTAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQ 280
            R  Y  Y+P  +GWDL A SA+  TWDANKPL+WR+KYGWTAFC   GP G+
Sbjct:   84 RATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGR 135          
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.437e-14
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  125 RTPYQHYHPVQIGWDLTAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQ 280
            R  Y  Y+P  +GWDL A SA+  TWDANKP AWR KYGWTAFC   GP G+
Sbjct:   83 RATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGR 134          
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.876e-14
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 2
Query:  125 RTPYQHYHPVQIGWDLTAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQTA 286
            R  Y  Y+P Q  WDL A SA+  TWDA+KP AWR KYGWTAFC   GP GQ +
Sbjct:   78 RATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131          
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.312e-14
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 2
Query:  125 RTPYQHYHPVQIGWDLTAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQTA 286
            R  Y  Y+P  I WDL  AS +  TWDA+KPL WR++YGWTAFC   GP GQ +
Sbjct:   30 RATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQAS 83          
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.312e-14
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  125 RTPYQHYHPVQIGWDL--TAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQTA 286
            R  Y +Y P Q  WDL   A SA+  TWDA+KPL+WR KYGWTAFC   GP GQ A
Sbjct:    7 RATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAA 62          
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.883e-13
Identity = 32/56 (57.14%), Postives = 36/56 (64.29%), Query Frame = 2
Query:  125 RTPYQHYHPVQIGWDL--TAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQTA 286
            R  Y +Y P Q  WDL   A SA+  TWDA+KPL+WR KYGWTAFC   G  GQ A
Sbjct:   30 RATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAA 85          
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.756e-12
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 2
Query:  125 RTPYQHYHPVQIGWDL--TAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQTA 286
            R  Y +Y P Q  WDL   A SA+  TWDA+KPL+WR KYGWTAFC   G  GQ +
Sbjct:   28 RATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAS 83          
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.294e-12
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 2
Query:  134 YQHYHPVQIGWDLTAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQTA 286
            Y  Y+    GWDL AASA+  TWDANKP +WR KYGWTAFC   G  GQ++
Sbjct:   77 YHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSS 127          
The following BLAST results are available for this feature:
BLAST of CX306080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4B_TOBAC3.419e-1669.23Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PR4A_TOBAC3.419e-1669.23Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
WIN1_SOLTU6.449e-1561.54Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WIN2_SOLTU1.437e-1461.54Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVL_ARATH1.876e-1459.26Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
PRP2_SOLLC9.312e-1455.56Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
BARW_HORVU9.312e-1458.93Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT7.883e-1357.14Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT1.756e-1255.36Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
HEVE_HEVBR2.294e-1258.82Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC18013G02Rv Drought1 Citrus clementina cDNA clone C18013G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306080 ID=CX306080; Name=CX306080; organism=Citrus clementina; type=EST; length=288bp
GTAACCAGCTAGCGGTATTATTATTCTAAATAACGGACCAAGCTAGCTGC
TCTTTAATCTCTAGGATTAAAATTATGAATAAGTACCCTGTGATCCTTTC
TGGGTTAATAAATTCTACTGTGGGAGAACACCTTATCAACACTACCACCC
TGTGCAAATTGGATGGGACTTGACGGCAGCGAGCGCTTTCTTGCCAACAT
GGGATGCCAACAAGCCCTTGGCCTGGCGCCAGAAATATGGCTGGACTGCT
TTCTGTCATTCGGGCGGACCCATTGGACAAACTGCTTG
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