CX306081

Overview
NameCX306081
Unique NameCX306081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9835 contig Ccv1_Contig9835:1..341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.826e-32
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   40 KNMGRFGLCV-ILPVCLLVXXXXXXXXXNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIV 342
            + +  + LCV +L + +++         NVR+TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  V
Sbjct:    2 ERVNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTV 103          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.937e-32
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   40 KNMGRFGLCV-ILPVCLLVXXXXXXXXXNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIV 342
            + +  + LCV +L + +++         NVR+TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  V
Sbjct:    2 ERVNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATV 103          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.072e-29
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  121 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIV 342
            NVRATYHLY+P+ I WDL  AS +CATWDA+KPL WR++YGWTAFC   GP GQ +CGRCLRVTN+GTG Q+ V
Sbjct:   28 NVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETV 101          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.874e-29
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 1
Query:  121 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIV 342
            NVRATYH+Y+P+ +GWDL A SA+C+TWDANKPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  V
Sbjct:   82 NVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTV 155          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.754e-28
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  121 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIV 342
            NVRATYH+Y+P+ +GWDL A SA+C+TWDANKP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  V
Sbjct:   81 NVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTV 154          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.239e-26
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 1
Query:  121 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIV 342
            NV ATYHLY+ +  GWDL AASA+C+TWDANKP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  V
Sbjct:   72 NVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTV 145          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 51/73 (69.86%), Postives = 56/73 (76.71%), Query Frame = 1
Query:  121 NVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQ 333
            +VRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQ ACG+CLRVTN  TGAQ
Sbjct:    5 DVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQ 77          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.371e-25
Identity = 51/73 (69.86%), Postives = 55/73 (75.34%), Query Frame = 1
Query:  121 NVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQ 333
            NVRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQ ACG+CLRVTN  TGAQ
Sbjct:   28 NVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQ 100          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  121 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGA 330
            NVRATYH Y+P Q  WDL A SA+C+TWDA+KP AWR KYGWTAFC   GP GQ +CG+CLRV N+ T A
Sbjct:   76 NVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNA 145          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 51/93 (54.84%), Postives = 60/93 (64.52%), Query Frame = 1
Query:   61 LCVILPVCLLVXXXXXXXXXNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQ 333
            + V+  +C            NVRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQ +CG+CL+VTN  TGAQ
Sbjct:    6 MLVVALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQ 98          
The following BLAST results are available for this feature:
BLAST of CX306081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4A_TOBAC5.826e-3259.80Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC9.937e-3259.80Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC2.072e-2970.27Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN1_SOLTU7.874e-2968.92Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WIN2_SOLTU1.754e-2868.92Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR6.239e-2666.22Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
BARW_HORVU1.064e-2569.86Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT2.371e-2569.86Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
HEVL_ARATH4.044e-2567.14Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
WHW1_WHEAT6.898e-2554.84Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18013G03Rv Drought1 Citrus clementina cDNA clone C18013G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306081 ID=CX306081; Name=CX306081; organism=Citrus clementina; type=EST; length=344bp
GCGGGGGCAACGGATAAGTTAAGCTTAGAACATTAAGAGAAAAATATGGG
GAGGTTCGGTCTCTGTGTGATTCTGCCAGTTTGTCTACTGGTGGCAGCTG
CTTCTGCCCAAAGTGCTTCTAATGTGAGAGCCACGTATCATCTCTACCAC
CCTGAGCAAATTGGATGGGACTTGACGGCAGCGAGCGCTTTCTGCGCAAC
ATGGGATGCCAACAAGCCCTTGGCCTGGCGCCAGAAATATGGCTGGACTG
CTTTCTGTCATTCGGGCGGACCCATTGGACAAACTGCTTGTGGCAGGTGC
TTAAGGGTCACAAACAGTGGTACAGGAGCCCAACAAATTGTGAG
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