CX306084

Overview
NameCX306084
Unique NameCX306084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig878 contig Ccv1_Contig878:1..383. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306084 vs. ExPASy Swiss-Prot
Match: CCD25_XENTR (Coiled-coil domain-containing protein 25 OS=Xenopus tropicalis GN=ccdc25 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.082e-33
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 3
Query:  108 MVFYFKARPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 383
            MVFYF +   +  YT++MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRL K QTI+DI + VL DCAQLVKANSIQG K+NNI+VVYT
Sbjct:    1 MVFYFTSNVISPPYTMYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKDQTIEDIPKEVLLDCAQLVKANSIQGCKMNNINVVYT 92          
BLAST of CX306084 vs. ExPASy Swiss-Prot
Match: CCD25_BOVIN (Coiled-coil domain-containing protein 25 OS=Bos taurus GN=CCDC25 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.148e-33
Identity = 67/93 (72.04%), Postives = 79/93 (84.95%), Query Frame = 3
Query:  108 MVFYFKARP-EAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 383
            MVFYF +    +  YTI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRLHKG+ I+DI + VL DCA LVKANSIQG K+NN++VVYT
Sbjct:    1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYT 93          
BLAST of CX306084 vs. ExPASy Swiss-Prot
Match: CCD25_PONAB (Coiled-coil domain-containing protein 25 OS=Pongo abelii GN=CCDC25 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.160e-33
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 3
Query:  108 MVFYFKARP-EAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 383
            MVFYF +    +  YTI+MG DKYENE+LIK+G+PEDIWFHVDK+SSAHVYLRLHKG+ I+DI + VL DCA LVKANSIQG K+NN++VVYT
Sbjct:    1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYT 93          
BLAST of CX306084 vs. ExPASy Swiss-Prot
Match: CCD25_HUMAN (Coiled-coil domain-containing protein 25 OS=Homo sapiens GN=CCDC25 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.160e-33
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 3
Query:  108 MVFYFKARP-EAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 383
            MVFYF +    +  YTI+MG DKYENE+LIK+G+PEDIWFHVDK+SSAHVYLRLHKG+ I+DI + VL DCA LVKANSIQG K+NN++VVYT
Sbjct:    1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYT 93          
BLAST of CX306084 vs. ExPASy Swiss-Prot
Match: CCD25_MOUSE (Coiled-coil domain-containing protein 25 OS=Mus musculus GN=Ccdc25 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.041e-32
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 3
Query:  108 MVFYFKARP-EAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 383
            MVFYF +    +  YTI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRL KG+ I+DI + VL DCA LVKANSIQG K+NN++VVYT
Sbjct:    1 MVFYFTSSSVNSSTYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKGEKIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYT 93          
BLAST of CX306084 vs. ExPASy Swiss-Prot
Match: CCD25_DANRE (Coiled-coil domain-containing protein 25 OS=Danio rerio GN=ccdc25 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.665e-32
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 3
Query:  108 MVFYFKARPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 383
            MVFYF +   +  +TI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLR+ KG TIDDI + VL DC QLVK NSIQG K+NNI++VYT
Sbjct:    1 MVFYFTSAVVSPPHTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGTTIDDIPKEVLIDCVQLVKNNSIQGCKMNNINIVYT 92          
BLAST of CX306084 vs. ExPASy Swiss-Prot
Match: CCD25_DICDI (Coiled-coil domain-containing protein 25 homolog OS=Dictyostelium discoideum GN=ccdc25 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.977e-27
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  108 MVFYFKARPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 383
            MV YFK      +Y  +MG+DK+ENE+LIKYG+PED+WFHV+ +SSAHVYLRL KG+T +DI   +LE+C QLVK NSIQG K  ++D+VYT
Sbjct:    1 MVLYFKLIDP--EYICYMGIDKFENEDLIKYGWPEDVWFHVNDLSSAHVYLRLRKGETWNDIPANILEECCQLVKQNSIQGCKEASVDIVYT 90          
BLAST of CX306084 vs. ExPASy Swiss-Prot
Match: JLP2_YEAST (Protein JLP2 OS=Saccharomyces cerevisiae GN=JLP2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.131e-17
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  108 MVFYFKARPE--AGDYTIFMGLDKYENEELIKYGFPE--DIWFHVDKMSSAHVYLRLHKGQ-TIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 383
            MV++++++P   +  Y I MG DK+EN+ LIK+ + E   +WFH DK SS HVYL+L   + TIDDI + V+ DC QL K+ SIQGNK+    ++ T
Sbjct:    1 MVYFYESKPTEYSTPYQIVMGKDKFENDLLIKWSYRELNYVWFHADKYSSGHVYLKLRPNEKTIDDIPQEVICDCLQLCKSESIQGNKMPQCTILIT 97          
The following BLAST results are available for this feature:
BLAST of CX306084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CCD25_XENTR1.082e-3373.91Coiled-coil domain-containing protein 25 OS=Xenopu... [more]
CCD25_BOVIN3.148e-3372.04Coiled-coil domain-containing protein 25 OS=Bos ta... [more]
CCD25_PONAB9.160e-3370.97Coiled-coil domain-containing protein 25 OS=Pongo ... [more]
CCD25_HUMAN9.160e-3370.97Coiled-coil domain-containing protein 25 OS=Homo s... [more]
CCD25_MOUSE2.041e-3270.97Coiled-coil domain-containing protein 25 OS=Mus mu... [more]
CCD25_DANRE2.665e-3270.65Coiled-coil domain-containing protein 25 OS=Danio ... [more]
CCD25_DICDI1.977e-2760.87Coiled-coil domain-containing protein 25 homolog O... [more]
JLP2_YEAST4.131e-1746.39Protein JLP2 OS=Saccharomyces cerevisiae GN=JLP2 P... [more]
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Properties
Property NameValue
Genbank descriptionC18013G06Rv Drought1 Citrus clementina cDNA clone C18013G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306084 ID=CX306084; Name=CX306084; organism=Citrus clementina; type=EST; length=383bp
GCGGGGGAAACCGCATTTATGATTACATAATTTTTCAGCGATCTGCAGTA
AGAAAGAGGGAGAAGAAAAACGCAAGGAGTCTGTGGTCTCAAGAGCGACG
ACGAAAGATGGTGTTTTACTTCAAAGCCCGACCAGAGGCCGGCGATTACA
CAATTTTCATGGGTCTCGACAAGTACGAGAACGAGGAACTGATCAAATAC
GGCTTCCCCGAAGACATTTGGTTTCATGTGGATAAAATGTCTTCTGCTCA
TGTGTATTTGAGATTACACAAAGGCCAAACTATTGATGATATTAGTGAAG
GCGTATTGGAAGATTGTGCTCAGCTTGTCAAAGCTAATTCCATTCAAGGC
AATAAGGTGAATAACATTGATGTTGTTTATACA
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