CX306158

Overview
NameCX306158
Unique NameCX306158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig873 contig Ccv1_Contig873:1..368. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.538e-35
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLDR++ASVFYKT ESSAA MT  SGIRKILPKSEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGF+YASFE+VG
Sbjct:  185 EMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVG 265          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.330e-35
Identity = 68/94 (72.34%), Postives = 83/94 (88.30%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG-NISLRDIQFLLT 299
            EMCMTGLD+++ASVFYK   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNS+EGDA+STIHVTPEDGFSYASFEAVG + +  D+  L++
Sbjct:  185 EMCMTGLDKEKASVFYKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSVEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVS 278          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.655e-35
Identity = 69/94 (73.40%), Postives = 82/94 (87.23%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG-NISLRDIQFLLT 299
            EMCMTGLD+ +ASVFYK   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVG + +  D+  L++
Sbjct:  181 EMCMTGLDKDKASVFYKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVS 274          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.645e-34
Identity = 69/94 (73.40%), Postives = 80/94 (85.11%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG-NISLRDIQFLLT 299
            EMCMTGLDR++A+VFYK        MT++SGIRKILPKSEICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVG + +  D+  L+T
Sbjct:  182 EMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVT 275          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.149e-34
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCM GLDR++ASVFYKT ESSAA MT  SGIRKILPK EICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VG
Sbjct:  183 EMCMAGLDREKASVFYKTEESSAAHMTVRSGIRKILPKFEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVG 263          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.806e-34
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVG
Sbjct:  185 EMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVG 265          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.806e-34
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVG
Sbjct:  185 EMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVG 265          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.806e-34
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VG
Sbjct:  185 EMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVG 265          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.665e-34
Identity = 66/81 (81.48%), Postives = 76/81 (93.83%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EM MTGL ++ ASVF+K+  SSAA+MTEDSGIRKILP+S+ICDF+FDPCGYSMN+IEGDA+STIHVTPEDGFSYASFEAVG
Sbjct:  183 EMSMTGLSKRNASVFFKSESSSAAVMTEDSGIRKILPESQICDFDFDPCGYSMNAIEGDAISTIHVTPEDGFSYASFEAVG 263          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.252e-34
Identity = 68/81 (83.95%), Postives = 73/81 (90.12%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLDR++ASVFYK+  SSAA+MT  SGIRKILP SEICDFEFDPCGYSMNSIE  A+STIHVTPEDGFSYASFEA G
Sbjct:  183 EMCMTGLDREKASVFYKSESSSAALMTTRSGIRKILPDSEICDFEFDPCGYSMNSIEEAAISTIHVTPEDGFSYASFEAAG 263          
The following BLAST results are available for this feature:
BLAST of CX306158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DCAM_SOLTU2.538e-3586.42S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM2_BRAJU4.330e-3572.34S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_ARATH5.655e-3573.40S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM1_ARATH1.645e-3473.40S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_SOLCI2.149e-3485.19S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_TOBAC2.806e-3485.19S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_NICSY2.806e-3485.19S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_DATST2.806e-3485.19S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_HELAN3.665e-3481.48S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM_CATRO6.252e-3483.95S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionC18014F12Rv Drought1 Citrus clementina cDNA clone C18014F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306158 ID=CX306158; Name=CX306158; organism=Citrus clementina; type=EST; length=368bp
CGCCCGGGCAGGTACGCGGGGAGATGTGCATGACTGGTTTGGACAGAAAG
AGGGCATCTGTCTTCTACAAAACTAATGAAAGCTCAGCCGCTATGATGAC
CGAGGACTCTGGCATCAGAAAGATTCTTCCAAAATCTGAGATTTGTGATT
TTGAGTTTGACCCTTGTGGTTACTCCATGAATAGTATTGAAGGGGATGCA
GTATCTACTATCCACGTCACACCTGAAGATGGTTTCAGTTATGCAAGTTT
TGAGGCCGTGGGTAATATAAGCCTGAGAGATATTCAGTTCCTTTTAACTA
CACCGGAGATCTATCACGATTATAGATCTATCACTGCTAAGAACTTCCTG
ACAGCAGTTCGAAAGTAC
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