CX306159

Overview
NameCX306159
Unique NameCX306159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.685e-31
Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    7 GSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGK-SVQAISTEV-KKGTKMQTYTI-AAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPL 318
            GS EAE+M+ TI+ECE   + GE+KYCATSLESM+DFS SKLGK  V+A+STEV KK   MQ Y I AAGVK+++ DKSVVCHKQ YP+AVFYCH    T  Y VPL
Sbjct:  232 GSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLGKYHVRAVSTEVAKKNAPMQKYKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKAMMTTVYAVPL 338          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.867e-22
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 1
Query:    7 GSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKS-VQAISTEV-KKGTKMQTYTIAAGVKQMAA----DKSVVCHKQNYPYAVFYCHATQTTRAYIVPL 318
            GSVEA  M  T+++CE P  +GE+K CATSLESM+DF+TS LG S V+A ST V K+G+  Q YT+ A VK+ AA    D+ V CH + Y YAVF CH T+ TRAY V +
Sbjct:  266 GSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGTSHVRAASTVVGKEGSPEQEYTVTA-VKRAAAGGDQDQLVACHAEPYAYAVFACHLTRATRAYAVSM 374          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.521e-21
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    7 GSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEV--KKG-TKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAY 306
            GSV+A +++NT+ ECE P  KGE+K CATSLESM+DF  S LG + ++A ST +  K G T  Q YT+    +     + + CH ++YPYAVF CH T+ TRAY
Sbjct:  162 GSVDASVVKNTLLECELPANKGEKKACATSLESMVDFVASSLGTRDIKAASTFLVGKDGDTPAQEYTVTGARRMAETGQLIACHPESYPYAVFMCHLTEATRAY 265          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.643e-18
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    7 GSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKS-VQAIST-----EVKKGTKMQTYTIAAGVKQMA-ADKSVVCHKQNYPYAVFYCHATQ-TTRAY 306
            GS +A  M  T+++CE P  KGE+K CATSLES++DF TS  G S V A ST      V+  +  Q YT+ +GV++MA   + + CH ++YPYAVF CH T+ TTRAY
Sbjct:  420 GSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFGASDVDAASTVVLSKAVESSSLAQDYTV-SGVRRMAGTGQLIACHPESYPYAVFMCHLTEATTRAY 526          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.887e-15
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 AGGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLG-KSVQAI-STEVKKGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPL 318
            A  S     M+ T++ CE P I GE K+CATSLE++++ +   LG + ++ + ST  + G  +QTYT+ A          V CH + YPY V+ CH T  +RAY V +
Sbjct:  194 ASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVERAMGVLGTRDIRPVTSTLPRAGAPLQTYTVVAVQPVEGGPVFVACHDEAYPYTVYRCHTTGPSRAYTVDM 301          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.431e-15
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 AGGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLG-KSVQAI-STEVKKGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPL 318
            A  S     M+ T++ CE P I GE K+CATSLE++++ +   LG + ++ + ST  + G  +QTYT+ +          V CH + YPY V+ CH T  +RAY+V +
Sbjct:  221 ASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTSTLPRAGAPLQTYTVRSVRPVEGGPVFVACHDEAYPYTVYRCHTTGPSRAYMVDM 328          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.431e-15
Identity = 49/108 (45.37%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    7 GSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEVKKG--TKMQTYTI-AAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPL 318
            GS  A+ M++T+ ECE     GE K CATSLESM++F+ S LG + V A+STEV +   T  Q Y + A     ++    V CH   Y YAVF CH T T  AY V L
Sbjct:   81 GSPAADAMRSTLAECEAAPQAGEAKRCATSLESMVEFAASSLGTRDVHAVSTEVDRAGPTPRQAYRVEAVRPVPVSGGDMVACHGMAYAYAVFGCHTT-TAAAYTVTL 187          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.444e-14
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 AGGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLG-KSVQAI-STEVKKGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPL 318
            A  + EA  M+ T++ CE P + GE K+CATSLE++++ + + LG + + A+ ST  + G  +Q Y + A V  +     V CH Q YPY V+ CH T   RAY+V +
Sbjct:  242 APDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAVRA-VLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYMVEM 348          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: BURP8_ORYSJ (BURP domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=BURP8 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.287e-14
Identity = 48/113 (42.48%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    7 GSVEAEIMQNTIKECEDP--GIKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEV----KKGTKMQTYTIAA--GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYIVPL 318
            GS  AE M+ T+ ECE    G + + K+C TSLESM++F+ + LG + ++A+STEV       T  Q YT+ A   V  ++    V CH   Y YAVF CH T T  AY V L
Sbjct:  151 GSRAAEDMRTTLAECEAALLGARDQAKHCVTSLESMVEFAAASLGTRDIRAVSTEVIGTGAAETPRQEYTVEAVKPVVSVSGGNMVTCHGMPYAYAVFGCHTT-TATAYAVTL 262          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.529e-13
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   25 IMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAY 306
            I+ + ++ECE P    E K C  S E MIDF+TS LG+SV   +TE   G+K +       G+      KSV CH+  YPY ++YCH+    R Y
Sbjct:  467 IITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVY 561          
The following BLAST results are available for this feature:
BLAST of CX306159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RD22_ARATH1.685e-3165.42Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP3_ORYSJ1.867e-2254.55BURP domain-containing protein 3 OS=Oryza sativa s... [more]
BURP5_ORYSJ3.521e-2149.04BURP domain-containing protein 5 OS=Oryza sativa s... [more]
BURPH_ORYSJ3.643e-1849.07BURP domain-containing protein 17 OS=Oryza sativa ... [more]
RAF1B_WHEAT2.887e-1537.96Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
RAF1A_WHEAT6.431e-1537.04Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURP6_ORYSJ6.431e-1545.37BURP domain-containing protein 6 OS=Oryza sativa s... [more]
BURPD_ORYSJ2.444e-1438.89BURP domain-containing protein 13 OS=Oryza sativa ... [more]
BURP8_ORYSJ9.287e-1442.48BURP domain-containing protein 8 OS=Oryza sativa s... [more]
JP630_ARATH3.529e-1340.00Probable polygalacturonase non-catalytic subunit J... [more]

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Properties
Property NameValue
Genbank descriptionC18014G01Rv Drought1 Citrus clementina cDNA clone C18014G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306159 ID=CX306159; Name=CX306159; organism=Citrus clementina; type=EST; length=320bp
GCGGGTGGATCAGTTGAAGCTGAAATAATGCAGAACACAATCAAAGAGTG
TGAAGACCCTGGCATTAAAGGAGAGCAGAAATATTGTGCAACTTCATTGG
AGTCAATGATTGACTTCAGCACTTCTAAGCTTGGAAAGAGTGTTCAGGCA
ATTTCTACGGAGGTAAAAAAAGGAACCAAGATGCAGACATATACAATCGC
AGCTGGAGTGAAGCAGATGGCAGCCGACAAATCAGTAGTGTGCCATAAGC
AGAACTATCCATATGCTGTATTCTACTGCCATGCAACACAAACCACAAGG
GCTTACATAGTTCCCTTGGA
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