CX306167

Overview
NameCX306167
Unique NameCX306167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:598..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.925e-21
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = -3
Query:  306 EYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVAT 491
            EYID+AVRHVLLRQGVLG+KVKIML WDP GKQGP TPLPD+V IH+PK+++ Y+ P  V T
Sbjct:  166 EYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVT 227          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = -3
Query:  300 EYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDI 491
            EYID+AVRHVLLRQGVLGIKVKIML WDP GK GP TPLPD+V IH+PKD+  Y  P   A  +
Sbjct:  166 EYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAAPV 229          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = -3
Query:  309 EYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVA 491
            EYIDSAVRHVLLRQGVLGIKVK+ML WDP G  GP TPLPD+V IHSPK+EE    P  VA
Sbjct:  166 EYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVA 226          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.428e-16
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML+WDP+GK GP  PLPD V+I  PKDE
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PKDE
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PKDE
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PKDE
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PKDE
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
The following BLAST results are available for this feature:
BLAST of CX306167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RS33_ARATH1.925e-2172.5840S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS31_ARATH3.631e-2070.3140S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS32_ARATH4.743e-2075.4140S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS3_AMBME1.428e-1676.9240S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]
RS3_RAT2.436e-1676.9240S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_MOUSE2.436e-1676.9240S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS32_XENLA2.436e-1676.9240S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS31_XENLA2.436e-1676.9240S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_PONAB3.181e-1676.9240S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]
RS3_PIG3.181e-1676.9240S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC18014G09Rv Drought1 Citrus clementina cDNA clone C18014G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306167 ID=CX306167; Name=CX306167; organism=Citrus clementina; type=EST; length=496bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAACAAGAGCCATATTGCAGT
TACAGCTCAAGCAAATAGAATACAAAAAAAACAATGTGCAACAGATTAAA
CAAGAAAATTGGTTGATAATTATGAAATCTTTAACAATACTGATGACTAC
AGTATATCAAAATTAACACCATGGAGTCTGAGGTATCCTTCATTAGCAAC
AAAAATGAAAACTAGAGCACTTCAAATACCACTGATAAAATATCAAAGAA
GATGAGACTATTCCCCACTTCGGCCTTAAGCCACTTGGATTGGGACCTCA
ATATCAGTAGCAACCAATGTTGGCTTGACATACTCCTCTTCATCCTTGGG
TGAGTGGATTGTTACCAGATCAGGTAGAGGGGTAGTAGGACCTTGCTTTC
CATTAGGATCCCAACTAAGCATGATCTTGACCTTAATACCAAGTACACCC
TGTCTCAAAAGAACATGTCTCACAGCAGAGTCAATATATTCATTCA
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