CX306168

Overview
NameCX306168
Unique NameCX306168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13527 contig Ccv1_Contig13527:23..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 8.664e-64
Identity = 119/170 (70.00%), Postives = 141/170 (82.94%), Query Frame = 1
Query:   31 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTL 540
            MA+ +SP ASQL SSF S  +R+L++P+G+S SP R +P+ R+  F ++AIQ++KPT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVKAGPLRNT              +VILS+CLT+YG+ASFNEGEPSTAP LTL
Sbjct:    1 MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTL 169          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 4.754e-62
Identity = 120/171 (70.18%), Postives = 139/171 (81.29%), Query Frame = 1
Query:   31 MASVSSPMASQLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTL 540
            MA+ +SPMASQL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFVKAGPLRNT              VVILS+CLTIYGI+SF EGEPS AP LTL
Sbjct:    1 MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTL 171          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.059e-61
Identity = 122/171 (71.35%), Postives = 138/171 (80.70%), Query Frame = 1
Query:   31 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTL 540
            MA+ +SPMASQLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFVKAGPLRNTE             VVILS+CLT+YGIASF EGEPS AP LTL
Sbjct:    1 MAATTSPMASQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTL 168          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.629e-55
Identity = 108/164 (65.85%), Postives = 125/164 (76.22%), Query Frame = 1
Query:   49 PMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTL 540
            PMASQ+  S       +   PRG+SG+        R PRF+VKA++S+KPTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRNT +            V ILS+CLT+YG+ASFNEGEPSTAP LTL
Sbjct:    8 PMASQVMKS-----GLACSKPRGMSGASLT-----RRPRFVVKAVKSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTL 161          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.219e-26
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGE 513
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF K GPLRN+E+            ++I++ CL IYG+ SFN  +
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTND 105          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_ODOSI (Photosystem I reaction center subunit XI OS=Odontella sinensis GN=psaL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.365e-26
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGE 513
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLRN++I            ++IL++ LTIYG+A+F +G+
Sbjct:    5 IKPYNDDPFVGHLATPITSSSITRAILKNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRNSDIALFSGFLSTIGLILILTLGLTIYGVAAFGQGQ 105          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.086e-25
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAP 528
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+ P
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDP 111          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PHATR (Photosystem I reaction center subunit XI OS=Phaeodactylum tricornutum GN=psaL PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.928e-25
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNE 507
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLR++EI            +VIL++ LTIYG+A+F +
Sbjct:    5 IKPYNDDPFVGHLATPITSSAVTRAILQNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRDSEIGLLAGFLSTVGLIVILTLGLTIYGVAAFGQ 103          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGE 513
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+ ++GPF K GPLRNT++            ++I SI + IYGI +F+  E
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTFDNSE 105          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_SYNEN (Photosystem I reaction center subunit XI OS=Synechococcus elongatus naegeli GN=psaL PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 47/108 (43.52%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAP 528
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+L G+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+ P
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILPGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDP 111          
The following BLAST results are available for this feature:
BLAST of CX306168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_CUCSA8.664e-6470.00Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH4.754e-6270.18Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL1.059e-6171.35Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU5.629e-5565.85Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GUITH3.219e-2650.49Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_ODOSI9.365e-2653.47Photosystem I reaction center subunit XI OS=Odonte... [more]
PSAL_THEEB2.086e-2544.44Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_PHATR7.928e-2554.55Photosystem I reaction center subunit XI OS=Phaeod... [more]
PSAL_CYACA1.035e-2447.52Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_SYNEN1.352e-2443.52Photosystem I reaction center subunit XI OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionC18014G11Rv Drought1 Citrus clementina cDNA clone C18014G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306168 ID=CX306168; Name=CX306168; organism=Citrus clementina; type=EST; length=542bp
GCGGGGGTCTTTTAACAAACACAATCTCAAATGGCTTCTGTTTCTTCTCC
AATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTCCAGGAGCC
TGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTCC
AAGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAAAAGCCAAC
TTACCAGGTTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGG
AGACTCCAATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTA
CCAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGG
GTTGGCCCATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCAT
TGAGAAACACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGC
CTTGTTGTGATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATT
CAATGAAGGAGAGCCATCCACTGCTCCAGGCTTAACATTGAC
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