CX306169

Overview
NameCX306169
Unique NameCX306169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:1..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306169 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.655e-16
Identity = 49/134 (36.57%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  128 SEPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG--TNGQCPLDVIQLSSPSERGDNLRLLPYDNYK-IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSGGHPGAETLLNWFKIEKAG 508
            + PVLD  G+++++ ++Y ++  + GAGG    LG  T   CP  V+Q  S  + G  +     D+   +V+VSTDVN+ F V +  + C+   +W++D+YD+      + T G  G PG  TL +WFKIEKAG
Sbjct:   28 NSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG 160          
BLAST of CX306169 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 7.432e-14
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 2
Query:  104 PLLGISSNS-EPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLGT--NGQ--CPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGSGGHPGAETLLNWFKIEK 502
            PLL  + ++  PVLDI G K+++   Y ++PVL   GG  T   T  NG   CP  V+Q     +    L   P +N K  +V+VSTD+N+ F    +  PC      +W++D YD+      +  GG  G+PG ET+ +WFKIE+
Sbjct:   24 PLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFP-ENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE 165          
BLAST of CX306169 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 2
Query:  131 EPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHL---GTNGQCPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL---IVTGGSGGHPGAETLLNWFKIEKAG 508
            +P++DI G  V   ++Y ++  + GAGG    +   G   +CPL V+Q   P + G+ +      N K  IV  S D+N++F + ++   CNE   WKVD +   +   +  GG  G+ G E+  + FKI+KAG
Sbjct:    4 KPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQ--DPFDNGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN---CNETTAWKVDRFPGVIGWTVTLGGEKGYHGFESTHSMFKIKKAG 132          
The following BLAST results are available for this feature:
BLAST of CX306169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC4.655e-1636.5721 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU7.432e-1436.30Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA3.452e-1132.84Latex serine proteinase inhibitor OS=Carica papaya... [more]
back to top
Properties
Property NameValue
Genbank descriptionC18014G12Rv Drought1 Citrus clementina cDNA clone C18014G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306169 ID=CX306169; Name=CX306169; organism=Citrus clementina; type=EST; length=519bp
GCGGGGAACACAACAAACAGCAGCCAGCCTTCCAGTGGCAAAAAAAATGA
AGACTTCATTGATAACAACACTCTCCTTCCTTATCCTTACCTTGGCCACG
CAGCCTCTATTGGGCATCTCATCAAACTCTGAACCTGTCTTAGATATCAT
TGGCAACAAGGTCAAATCCACCCTCGAGTATAAACTTATCCCAGTCCTAG
ATGGCGCCGGTGGATTCAGCACACACCTAGGCACAAATGGACAGTGTCCC
TTGGACGTTATCCAATTAAGTTCTCCTAGCGAAAGGGGAGATAATTTAAG
ATTACTTCCGTACGACAATTACAAAATTGTCAAGGTATCCACTGATGTCA
ACCTGAGATTCCCCGTAAAAGTTTCTGTTAAGCCCTGTAATGAAGAACCA
TTGTGGAAAGTTGATAGCTATGACGATCCATTAATTGTAACCGGCGGAAG
TGGGGGCCACCCAGGAGCTGAAACGTTGCTAAATTGGTTTAAGATTGAGA
AAGCTGGAAATTTTTCATA
back to top