CX306172

Overview
NameCX306172
Unique NameCX306172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX306172_ssr22 microsatellite CX306172_ssr22:22..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14817 contig Ccv1_Contig14817:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.430e-75
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 1
Query:   85 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRE 501
            MVTFRFHQYQVVGR LP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRE
Sbjct:    1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRE 139          
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 2.525e-72
Identity = 129/139 (92.81%), Postives = 132/139 (94.96%), Query Frame = 1
Query:   85 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRE 501
            M  FRFHQYQVVGRALPTE D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRE
Sbjct:    1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRE 139          
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 5.625e-72
Identity = 127/136 (93.38%), Postives = 130/136 (95.59%), Query Frame = 1
Query:   94 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRE 501
            FRFHQYQVVGRALPTE+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRE
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRE 139          
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.792e-71
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 1
Query:   85 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRE 501
            M  FRFHQYQVVGR LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+  KLCKR+
Sbjct:    1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRD 139          
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.706e-41
Identity = 72/131 (54.96%), Postives = 104/131 (79.39%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKR 498
            +Y+V+GR LP+ES+  P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+  IQIIK   I A  C+R
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRR 139          
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 4.347e-40
Identity = 76/132 (57.58%), Postives = 97/132 (73.48%), Query Frame = 1
Query:  103 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKR 498
            H++QVVGR +PTE D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EIFE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II    I A L +R
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRR 135          
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 9.684e-40
Identity = 71/132 (53.79%), Postives = 103/132 (78.03%), Query Frame = 1
Query:  103 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKR 498
            ++Y VVGR +PTE +    I++M+++ATN V AKS+FWYF+  L++VKK+NG++L+I ++FEKNP  +KNYG+WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++  I I+K  T+ A+  KR
Sbjct:   11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKR 142          
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.818e-39
Identity = 72/126 (57.14%), Postives = 101/126 (80.16%), Query Frame = 1
Query:  100 FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATI 477
            F +YQV+GR LPTES   PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I I+K A I
Sbjct:    4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEI 129          
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.680e-39
Identity = 70/131 (53.44%), Postives = 101/131 (77.10%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKR 498
            +Y+VVGR LP+E +    +Y+M+++A + + AKS+FWYFLR+LKK KK+ G++++I +++E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+  IQIIK  +IPA   +R
Sbjct:    9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRR 139          
BLAST of CX306172 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 8.198e-39
Identity = 71/131 (54.20%), Postives = 98/131 (74.81%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKR 498
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRR 139          
The following BLAST results are available for this feature:
BLAST of CX306172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_CASSA1.430e-7596.4060S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
R18A2_ARATH2.525e-7292.8160S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH5.625e-7293.3860S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_ORYSJ2.792e-7191.3760S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_SPOFR6.706e-4154.9660S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL18A_DICDI4.347e-4057.5860S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_CAEEL9.684e-4053.7960S ribosomal protein L18a OS=Caenorhabditis elega... [more]
RL20_YEAST2.818e-3957.1460S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_DROME3.680e-3953.4460S ribosomal protein L18a OS=Drosophila melanogas... [more]
RL18A_HUMAN8.198e-3954.2060S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionC18014H06Rv Drought1 Citrus clementina cDNA clone C18014H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306172 ID=CX306172; Name=CX306172; organism=Citrus clementina; type=EST; length=502bp
GCGGGCTCCACAACAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGTTACGC
TGCGGAGATCGTCACATCTTGTATTTCCTCGAAAATGGTCACTTTCAGGT
TTCACCAGTATCAGGTTGTTGGGAGAGCTCTTCCAACTGAGTCCGATGAG
CATCCTAAGATTTACAGGATGAAGTTGTGGGCCACGAATGAGGTTCGAGC
CAAGTCCAAGTTCTGGTACTTTCTTAGAAAGCTCAAGAAGGTCAAGAAGA
GTAATGGTCAAATGCTTGCCATTAACGAGATTTTTGAGAAGAACCCAACC
AAGATCAAGAACTATGGCATCTGGTTGCGTTATCAGAGTCGAACTGGTTA
TCACAATATGTACAAGGAGTACCGTGATACCACTCTGAACGGGGCTGTGG
AGCAGATGTACACTGAGATGGCTTCTCGCCATAGGGTCAGGTCTCCTTGC
ATTCAAATTATCAAGACTGCTACCATCCCTGCGAAGCTATGCAAGAGAGA
AA
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