CX306342

Overview
NameCX306342
Unique NameCX306342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX306342_ssr361 microsatellite CX306342_ssr361:361..372. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9240 contig Ccv1_Contig9240:168..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.451e-26
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = -3
Query:  184 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKAGGD 354
            LAVLQFYKVD +GKVQ LRKECPNAECGAGTFM NHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.451e-26
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = -3
Query:  184 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKAGGD 354
            LAVLQFYKVD +GKVQ LRKECPNAECGAGTFM NHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.110e-24
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = -3
Query:  190 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKAG 354
            LAVLQFYKVDGSGKVQ LRKECPNA CGAGTFM +HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.450e-24
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = -3
Query:  190 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKAG 354
            LAVLQFYK+DGSGKVQ LRKECPNA CGAGTFM +HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.197e-24
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = -3
Query:  193 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKA 354
            LAVLQFYKVD SGKVQ LRKECPN ECGAGTFM NHFDRHYCGKCG TYVYQKA
Sbjct:   24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_ASPOF (40S ribosomal protein S27a OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.024e-22
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVLQFYKVD +GKV  LRKECPNAECGAGTFM NH DRHYCGKCGLTYVYQK
Sbjct:   24 LAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.343e-21
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = -3
Query:  193 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKA 354
            LAVLQFYKVDGSGKVQ L+KECP+  CG GTFM +HFDRHYCGKCG TYV++KA
Sbjct:   24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.702e-21
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = -3
Query:  193 LAVLQFYKVD-GSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVY-QKA 354
            LAVLQFYKVD  +GKV  LRKECPNA+CGAGTFM NHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.830e-20
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = -3
Query:  193 LAVLQFYKVD-GSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVY-QKA 354
            LAVLQFYKVD  +GKV  LRKECPN +CGAGTFM NHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.830e-20
Identity = 47/56 (83.93%), Postives = 48/56 (85.71%), Query Frame = -3
Query:  193 LAVLQFYKVD-GSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVY-QKA 354
            LAVLQFYKVD  +GKV  LRKECPN ECGAG FM NHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79          
The following BLAST results are available for this feature:
BLAST of CX306342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS27A_SOLTU3.451e-2691.2340S ribosomal protein S27a OS=Solanum tuberosum GN... [more]
RS27A_SOLLC3.451e-2691.2340S ribosomal protein S27a OS=Solanum lycopersicum... [more]
R27AB_ARATH1.110e-2490.9140S ribosomal protein S27a-2 OS=Arabidopsis thalia... [more]
R27AC_ARATH1.450e-2489.0940S ribosomal protein S27a-3 OS=Arabidopsis thalia... [more]
RS27A_LUPAL7.197e-2490.7440S ribosomal protein S27a OS=Lupinus albus PE=3 S... [more]
RS27A_ASPOF3.024e-2288.6840S ribosomal protein S27a OS=Asparagus officinali... [more]
R27AA_ARATH3.343e-2179.6340S ribosomal protein S27a-1 OS=Arabidopsis thalia... [more]
RS27A_HORVU5.702e-2185.7140S ribosomal protein S27a OS=Hordeum vulgare GN=M... [more]
RS27A_ORYSJ2.830e-2083.9340S ribosomal protein S27a OS=Oryza sativa subsp. ... [more]
RS27A_MAIZE2.830e-2083.9340S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC18017A04Rv Drought1 Citrus clementina cDNA clone C18017A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306342 ID=CX306342; Name=CX306342; organism=Citrus clementina; type=EST; length=497bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAATTTAAAACAGATAACC
ATTTAATTAAAACGCTCCAGCAAACAAGTTTACAGTCAAACAAAATTACG
AAAGAGTCATAATTTTTGAACCACAAAAACCATAGTAATTAATACTAATT
AAAAATAGCAAAACAACCACCTAATCTCGATCAATCACCGCCAGCCTTCT
GGTAAACATAGGTGAGTCCACACTTGCCGCAGTAGTGCCTGTCAAAGTGG
TTAGTCATGAAGGTGCCGGCTCCACACTCAGCATTCGGACACTCCTTCCT
CAGCCCCTGGACCTTTCCAGAACCATCGACCTTGTAAAACTGCAAGACGG
CGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTTTTCGGCTTGGTGTAG
GTCTTCTTCTTACGCTTCTTCGCGCCACCACGGAGACGGAGGACGAGGTG
GAGTGTTGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTGCCGT
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