CX306356

Overview
NameCX306356
Unique NameCX306356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL
Sbjct:  100 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF_CUCME (Profilin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            AL+IGIYDEPMTPGQCNMIVERLGDYLIDQGL
Sbjct:  100 ALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF2_SOYBN (Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  418 AALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 513
            AALIIGIYDEPMTPGQCNM+VERLGDYLIDQG
Sbjct:   99 AALIIGIYDEPMTPGQCNMVVERLGDYLIDQG 130          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            ALIIGIYDEPMTPGQCNM+VERLGDYL+DQGL
Sbjct:  100 ALIIGIYDEPMTPGQCNMVVERLGDYLVDQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF2_HEVBR (Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = -2
Query:  418 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 510
            ALIIGIYDEPMTPGQCNMIVERLGDYLIDQG
Sbjct:  100 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 130          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF6_HEVBR (Profilin-6 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            ALIIGIYDEP+TPGQCNMIVERLGDYL+DQGL
Sbjct:  100 ALIIGIYDEPLTPGQCNMIVERLGDYLLDQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF1_PHAVU (Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            AL+IGIYDEPMTPGQCNMIVERLGDYLI+QGL
Sbjct:  100 ALVIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF_PRUPE (Profilin OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            AL+IGIYDEPMTPGQCNMIVERLGDYL++QGL
Sbjct:  100 ALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF_PRUDU (Profilin OS=Prunus dulcis PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            ALIIGIYDEP+TPGQCNMIVERLGDYLI+QGL
Sbjct:  100 ALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF_PRUAV (Profilin OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            ALIIGIYDEP+TPGQCNMIVERLGDYLI+QGL
Sbjct:  100 ALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
The following BLAST results are available for this feature:
BLAST of CX306356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PROF1_RICCO9.085e-12100.00Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1[more]
PROF_CUCME1.186e-1196.88Profilin OS=Cucumis melo PE=1 SV=1[more]
PROF2_SOYBN1.186e-1196.88Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1[more]
PROF_LITCN1.550e-1193.75Profilin OS=Litchi chinensis PE=1 SV=1[more]
PROF2_HEVBR2.643e-11100.00Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1[more]
PROF6_HEVBR3.452e-1193.75Profilin-6 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF1_PHAVU3.452e-1193.75Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1[more]
PROF_PRUPE5.888e-1190.63Profilin OS=Prunus persica PE=1 SV=1[more]
PROF_PRUDU5.888e-1193.75Profilin OS=Prunus dulcis PE=1 SV=1[more]
PROF_PRUAV5.888e-1193.75Profilin OS=Prunus avium PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18017B06Rv Drought1 Citrus clementina cDNA clone C18017B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306356 ID=CX306356; Name=CX306356; organism=Citrus clementina; type=EST; length=517bp
TTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTAGA
ACCTTCCCAAGGGAAAAATATCTTTTACCAAAAATTGAGCATCCTTTAGA
ACCTTCCCAAGGGAAAAATAAATTCAACAACCAACGCAAAATACATTGAG
AAACAAGAATCTCACAAGTTTTACAACTCAAATTGACACATCCATTAGGA
TCCACTGTAATAGTGATTGGTAAAGTACCTTGACAACCATAACAATACTA
CAAATAGATGATATCAAGAACTTCCACATGCACCAAATCTTTCCTTTCCA
CACACAGTTCCCATAACTTTGAATACTGTAATATTATTACACCGAAGTTC
AACAGTGCGAGCTTTTTAGGGAAGCCAAGAAATGAAACAAATTAGCGGAC
ATACAAACCACCTAAAGACCCTGATCAATGAGATAATCACCAAGCCTTTC
AACAATCATGTTGCACTGCCCAGGGGTCATCGGCTCATCATAGATTCCAA
TGATTAAGGCTGCGCTG
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