CX306364

Overview
NameCX306364
Unique NameCX306364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 9.271e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV
Sbjct:    1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 140          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 2.983e-73
Identity = 136/140 (97.14%), Postives = 140/140 (100.00%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            MASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLERPGYRV
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRV 140          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 2.983e-73
Identity = 136/140 (97.14%), Postives = 140/140 (100.00%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            MASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLERPGYRV
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRV 140          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 4.762e-71
Identity = 133/140 (95.00%), Postives = 138/140 (98.57%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            MASEKK SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLER GYRV
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRV 140          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 4.762e-71
Identity = 133/140 (95.00%), Postives = 138/140 (98.57%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            MASEKK SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLER GYRV
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRV 140          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.201e-59
Identity = 110/136 (80.88%), Postives = 124/136 (91.18%), Query Frame = 1
Query:   94 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            +K  NPM+E+++ KLVLNIS+GESGDRLTRAAKVLEQLSGQTPVFSKARYT+R FGIRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIKYDPS GIYGMDF+VV++RPG RV
Sbjct:    3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRV 138          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL11_NEUCR (60S ribosomal protein L11 OS=Neurospora crassa GN=rpl-11 PE=3 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 1.345e-57
Identity = 108/140 (77.14%), Postives = 124/140 (88.57%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            M++E+K  NPMRE+++QKLVLNI VGESGDRLTRAAKVLEQLSGQTPV+SKARYTVR+FGIRRNEKI+ +VTVRG KA ++LE GLKVKEYEL +RNFS+TG FGFGI EHIDLGIKYDP  GIYGMDF+  + RPG RV
Sbjct:    1 MSTEQKAQNPMRELRIQKLVLNICVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRTFGIRRNEKISVHVTVRGPKAEEILERGLKVKEYELRKRNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMTRPGERV 140          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL11_ASHGO (60S ribosomal protein L11 OS=Ashbya gossypii GN=RPL11 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.139e-56
Identity = 107/135 (79.26%), Postives = 122/135 (90.37%), Query Frame = 1
Query:   97 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            K  NPMRE+K++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VT+RG K+ ++LE GLKVKEY+L  +NFS+TG FGFGIQEHIDLGIKYDPS GIYGMDF+VV+ RPG RV
Sbjct:    4 KAQNPMRELKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVHSKARYTVRTFGIRRNEKIAVHVTIRGPKSEEILERGLKVKEYQLRTKNFSETGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMGRPGGRV 138          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL11_CAEEL (60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.487e-56
Identity = 109/137 (79.56%), Postives = 119/137 (86.86%), Query Frame = 1
Query:   91 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            EKK  N MRE+K+QKL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FGFG+QEHIDLGIKYDP  GIYGMDF+VVL R G RV
Sbjct:   12 EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRV 148          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 5.651e-56
Identity = 105/132 (79.55%), Postives = 119/132 (90.15%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRV 501
            NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL RPG+ +
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSI 141          
The following BLAST results are available for this feature:
BLAST of CX306364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL11_MEDSA9.271e-75100.0060S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL112_ARATH2.983e-7397.1460S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH2.983e-7397.1460S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_ORYSJ4.762e-7195.0060S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI4.762e-7195.0060S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_SCHPO3.201e-5980.8860S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_NEUCR1.345e-5777.1460S ribosomal protein L11 OS=Neurospora crassa GN=... [more]
RL11_ASHGO1.139e-5679.2660S ribosomal protein L11 OS=Ashbya gossypii GN=RP... [more]
RL11_CAEEL1.487e-5679.5660S ribosomal protein L11 OS=Caenorhabditis elegan... [more]
RL11_RAT5.651e-5679.5560S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC18017C04Rv Drought1 Citrus clementina cDNA clone C18017C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306364 ID=CX306364; Name=CX306364; organism=Citrus clementina; type=EST; length=503bp
GCGGGGACTCTTACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGC
AGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAAC
TTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATC
TCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGA
GCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACACTGTTC
GGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTGACTGTT
AGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGA
ATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTGGCTTTG
GTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCCACTGGA
ATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGT
AGG
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