CX306383
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.572e-23 Identity = 65/160 (40.62%), Postives = 96/160 (60.00%), Query Frame = 3 Query: 6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-------HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKF-GQK 458 GTV +VEI+ + ++R FAFVTM S EEA+ A+ FD +V GR ++V F + + + SA R T HKLYV+NLSW + S LR+ F+ +S+KV++ + GRS G+GF++F++ E A+ +++ EL GRPLRL GQK Sbjct: 138 GTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE-VPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.343e-21 Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRL 443 G V VE+I K G++R F FVTM+S EE +AA QF+ E+ GR +RV P P++ ++ R ++ +++YV NL+W V L FS V +KVV+ + GRS G+GFV++++ EE AI SLDG +L GR +R+ Sbjct: 111 GNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 7.447e-21 Identity = 61/162 (37.65%), Postives = 89/162 (54.94%), Query Frame = 3 Query: 6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRL 443 G V VE+I K G++R F FVTM+S EE +AA QF+ E+ GR +RV P P++ ++ RE + +++YV NL+W V L FS V +KVV+ + GRS G+GFV++++ EE AI SLDG +L GR +R+ Sbjct: 111 GNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.830e-20 Identity = 57/153 (37.25%), Postives = 90/153 (58.82%), Query Frame = 3 Query: 6 GTVVDVEIIRHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458 GTV E+I ++ ++R F FVTM+S +EA+ AV +F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS + V ++VV+ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++ Sbjct: 174 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.696e-20 Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = 3 Query: 6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458 G V VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV + R S+ AR ++ +++YV NLSW V L+E FS N V +KVV+ + GRS G+GFV++++ +E AI SL+G +L GR +R+ ++ Sbjct: 111 GNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.696e-20 Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = 3 Query: 6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458 G V VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV + R S+ AR ++ +++YV NLSW V L+E FS N V +KVV+ + GRS G+GFV++++ +E AI SL+G +L GR +R+ ++ Sbjct: 112 GNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.234e-20 Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 3 Query: 6 GTVVDVEIIRHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455 G V E+I ++ ++R F FVTM++ EEA+ AV ++ +V+GR++ V A + + RP+R P R E +++YV N+ W + L + FS + VS++VV+ GRS G+GFV+ A++ E AI++LDG+ L GR +R+ + Sbjct: 160 GVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 6.971e-19 Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = 3 Query: 6 GTVVDVEIIRHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458 G V E+I ++ ++R F FVTM++ EEA AV + +++GR++ V A PR R AP + +++YV N+ W + L + FS + VS++VVF GRS G+GFV+ +++ E AI++LDG+ L GR +R+ ++ Sbjct: 121 GVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAA----PRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 4.518e-18 Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 3 Query: 6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--------PRPQRSASAPA--------RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRL 443 G V VE+I K G++R F FVTM+S E +AA QF+ E+ GR +RV K PR +S + +++YV NLSW V L FS V ++V++ + GRS G+GFV++ + +E + AI SLDG +L GR +R+ Sbjct: 115 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 1.113e-16 Identity = 48/165 (29.09%), Postives = 93/165 (56.36%), Query Frame = 3 Query: 3 GGTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKKKK 497 GG + +++I+ K KN N+AFV +A A+ + +++ I+++ +A + Q+S+S + L+V +L+ V LR F + +S V++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D+ + +N ++++ Sbjct: 98 GGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ-----SQQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRR 253 The following BLAST results are available for this feature:
BLAST of CX306383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306383 ID=CX306383; Name=CX306383; organism=Citrus clementina; type=EST; length=499bpback to top |