CX306383

Overview
NameCX306383
Unique NameCX306383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8957 contig Ccv1_Contig8957:428..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.572e-23
Identity = 65/160 (40.62%), Postives = 96/160 (60.00%), Query Frame = 3
Query:    6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-------HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKF-GQK 458
            GTV +VEI+  +   ++R FAFVTM S EEA+ A+  FD  +V GR ++V F +   +   +   SA  R T        HKLYV+NLSW + S  LR+ F+     +S+KV++  + GRS G+GF++F++ E    A+ +++  EL GRPLRL   GQK
Sbjct:  138 GTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE-VPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.343e-21
Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 3
Query:    6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRL 443
            G V  VE+I  K  G++R F FVTM+S EE +AA  QF+  E+ GR +RV        P P++  ++  R         ++ +++YV NL+W V    L   FS     V +KVV+  + GRS G+GFV++++ EE   AI SLDG +L GR +R+
Sbjct:  111 GNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.447e-21
Identity = 61/162 (37.65%), Postives = 89/162 (54.94%), Query Frame = 3
Query:    6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRL 443
            G V  VE+I  K  G++R F FVTM+S EE +AA  QF+  E+ GR +RV        P P++  ++  RE               + +++YV NL+W V    L   FS     V +KVV+  + GRS G+GFV++++ EE   AI SLDG +L GR +R+
Sbjct:  111 GNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.830e-20
Identity = 57/153 (37.25%), Postives = 90/153 (58.82%), Query Frame = 3
Query:    6 GTVVDVEIIRHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458
            GTV   E+I ++   ++R F FVTM+S +EA+ AV +F+  +++GR++ V  A     PR  R   AP   E   ++YV NL W V +  L + FS +   V ++VV+    GRS G+GFV+ +  +E   AIS+LDG+ L GR +R+   ++
Sbjct:  174 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.696e-20
Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = 3
Query:    6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458
            G V  VE+I  K  G++R F FVTM++ EE +AA  QF+  E+ GR IRV                       +   R   S+   AR     ++ +++YV NLSW V    L+E FS   N V +KVV+  + GRS G+GFV++++ +E   AI SL+G +L GR +R+   ++
Sbjct:  111 GNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.696e-20
Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = 3
Query:    6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458
            G V  VE+I  K  G++R F FVTM++ EE +AA  QF+  E+ GR IRV                       +   R   S+   AR     ++ +++YV NLSW V    L+E FS   N V +KVV+  + GRS G+GFV++++ +E   AI SL+G +L GR +R+   ++
Sbjct:  112 GNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.234e-20
Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 3
Query:    6 GTVVDVEIIRHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455
            G V   E+I ++   ++R F FVTM++ EEA+ AV  ++  +V+GR++ V  A + +  RP+R    P R  E  +++YV N+ W +    L + FS +   VS++VV+    GRS G+GFV+ A++ E   AI++LDG+ L GR +R+   +
Sbjct:  160 GVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.971e-19
Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = 3
Query:    6 GTVVDVEIIRHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458
            G V   E+I ++   ++R F FVTM++ EEA  AV  +   +++GR++ V  A     PR  R   AP   +  +++YV N+ W +    L + FS +   VS++VVF    GRS G+GFV+ +++ E   AI++LDG+ L GR +R+   ++
Sbjct:  121 GVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAA----PRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.518e-18
Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 3
Query:    6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--------PRPQRSASAPA--------RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRL 443
            G V  VE+I  K  G++R F FVTM+S  E +AA  QF+  E+ GR +RV       K        PR    +S             + +++YV NLSW V    L   FS     V ++V++  + GRS G+GFV++ + +E + AI SLDG +L GR +R+
Sbjct:  115 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.113e-16
Identity = 48/165 (29.09%), Postives = 93/165 (56.36%), Query Frame = 3
Query:    3 GGTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKKKK 497
            GG + +++I+  K  KN N+AFV      +A  A+   + +++   I+++ +A +      Q+S+S    +    L+V +L+  V    LR  F    + +S  V++    G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ +  K D+ + +N ++++
Sbjct:   98 GGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ-----SQQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRR 253          
The following BLAST results are available for this feature:
BLAST of CX306383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ROC5_NICSY3.572e-2340.6333 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY3.343e-2138.4629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL7.447e-2137.6530 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH2.830e-2037.2531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC2_NICSY3.696e-2035.4329 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL3.696e-2035.4331 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY8.234e-2035.9531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY6.971e-1934.6428 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH4.518e-1835.58Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
PUB1_YEAST1.113e-1629.09Nuclear and cytoplasmic polyadenylated RNA-binding... [more]

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Properties
Property NameValue
Genbank descriptionC18017D11Rv Drought1 Citrus clementina cDNA clone C18017D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306383 ID=CX306383; Name=CX306383; organism=Citrus clementina; type=EST; length=499bp
GCGGGGGAACTGTTGTAGATGTTGAGATTATAAGGCACAAAGGTGGGAAA
AACAGAAACTTTGCATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGC
TGCCGTTAATCAATTCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGG
TTGAGTTTGCAAAGAAATTCAAGAAACCACGACCTCAACGTTCTGCAAGT
GCCCCTGCTAGAGAAACACAACATAAGCTTTATGTGTCGAATCTTTCTTG
GAAAGTTAGATCTACTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATC
CTGTTTCCTCCAAGGTTGTTTTTGCGAGCAATGAAGGAAGATCCGCTGGG
TATGGCTTTGTCTCATTTGCCACAAAGGAAGAAGCAGAAGTAGCAATTTC
TTCTTTGGATGGCAAGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCG
GTCAAAAGAATGATGATGTATCAGAGAGTAACAAAAAAAAAAAAAAAAA
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