CX306398

Overview
NameCX306398
Unique NameCX306398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:259..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.141e-44
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = -2
Query:  170 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 433
            PFKPPKVAFRTKVFHPNINS GSICLDILKE WSPALTISKVL SICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.336e-44
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = -2
Query:  170 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 433
            PFKPPKVAFRTKVFHPN+NS GSICLDILKE WSPALTISKVL SICSLLTDPNPDDPLVPEIAHMYKTDRAKYE+TARSWTQKYAMG
Sbjct:   61 PFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 9.661e-44
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = -2
Query:  170 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 433
            PFKPPKVAFRTKVFHPNINS GSICLDILKE WSPALTISKVL SICSLLTDPNPDDPLVPEIAHMYKTDRAKYE TAR+WTQKYAMG
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.671e-43
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = -2
Query:  170 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 433
            PFKPPKVAFRTKVFHPNINS GSICLDILKE WSPALTISKVL SICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TARSWTQKYAMG
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 8.178e-43
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = -2
Query:  170 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 433
            PFKPPKVAFRTKVFHPNINS GSICLDILKE WSPALTISKVL SICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TAR+WTQKYAMG
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 8.178e-43
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = -2
Query:  170 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 433
            PFKPPKV+F+TKV+HPNINS GSICLDILKE WSPALTISKVL SICSLLTDPNPDDPLVPEIAHMYKTDR+KYE+TARSWTQKYAMG
Sbjct:   61 PFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.379e-42
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = -2
Query:  170 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 433
            PFKPPKVAFRTKV+HPNINS GSICLDILKE WSPALT+SKVL SICSLLTDPNPDDPLVPEIAH+YKTDR KYE+TA+SWTQKYAMG
Sbjct:   61 PFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 6.480e-40
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKV FRTKVFHPNINS G+ICLDILK+ WSPALTISKVL SICSLLTDPNPDDPLVPEIAH+YKTD+ KYE  ARSWTQKYA+
Sbjct:   61 PFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.722e-38
Identity = 72/88 (81.82%), Postives = 81/88 (92.05%), Query Frame = -2
Query:  170 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 433
            PFKPPKV F+TKV+HPNI+SKGSICLDILKE WSPA T SKVL SICSLLTDPNP+DPLVPEIAH+YK D++KYE+TA+ WTQKYAMG
Sbjct:   62 PFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.351e-37
Identity = 69/87 (79.31%), Postives = 80/87 (91.95%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKV F T+++HPNINS GSICLDIL++ WSPALTISKVL SICS+LTDPNPD+PLVPEIAH+YKTDRA+YE TAR WT+KYA+
Sbjct:   61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of CX306398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
UBC4_SOLLC1.141e-4496.59Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH4.336e-4494.32Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC8_ARATH9.661e-4494.32Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH3.671e-4393.18Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH8.178e-4392.05SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC11_ARATH8.178e-4390.91Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH2.379e-4289.77Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH6.480e-4086.21Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC12_ARATH2.722e-3881.82Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC1_COLGL1.351e-3779.31Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18017F05Rv Drought1 Citrus clementina cDNA clone C18017F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306398 ID=CX306398; Name=CX306398; organism=Citrus clementina; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTGAAAGTAACCCCACATAAAACCTTTTAACA
ACTTAGTAAACAAAACCAAGTNTNGTCTTTTAATATCTGACACAAACTTA
TTTCTATTATTTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCA
TACAGCCTAGCCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGA
GCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTC
AGGCACAAGTGGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTG
ACGGAAGTACCTTGGATATTGTCAAAGCAGGGCTCCACTACTCCTTGAGA
ATGTCAAGACAGATGCTACCTTTGCTGTTGATGTTAGGGTGGAAAACCTT
AGTACGGAAGGCCACCTTCGGGGGCTTGAATGGA
back to top