CX306403

Overview
NameCX306403
Unique NameCX306403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig887 contig Ccv1_Contig887:1..466. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.324e-38
Identity = 86/135 (63.70%), Postives = 90/135 (66.67%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIPS FG R  SV DPFS DVW P        S S E S F S +VDWKETPEAHVFKAD+PGL          DGRVLQISGER+VEKEDKND W RVE            PENAK+DQVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVT 135          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.799e-37
Identity = 82/136 (60.29%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   85 MSLIPSIFGNR---SVLDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIP IFG+R   S+ DPFS DV+ P       G++S E S FA+ ++DWKETPEAHVFKADLPGL          + RVLQISGER++EKEDKNDKW+RVE            PENAK+DQVKASMENGVLTVT
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVT 136          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.824e-36
Identity = 85/136 (62.50%), Postives = 94/136 (69.12%), Query Frame = 1
Query:   85 MSLIPSIFGNR---SVLDPFSSDVWAP---LG---SSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIP IFG+R   SV DPFS DV+ P   LG   S+S E S FA+ ++DWKETPEAHVFKADLPGL          + RVLQISGER+VEKEDKND W RVE            PENAK+DQVKASMENGVLTVT
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVT 136          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.051e-36
Identity = 82/140 (58.57%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAPL-----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIPS FG R  +V DPFS DVW P             S   E S F S +VDWKETPEAHVFKADLPG+          D RVLQISGERSVEKEDKND+W R+E            PENAK+DQVKA+MENGVLTVT
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVT 140          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.182e-35
Identity = 81/135 (60.00%), Postives = 90/135 (66.67%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAPLG------SSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIPSIFG R  +V DPFS DVW P        S S E S F + +VDWKETPEAHVF+AD+PGL          D RVLQISGER++EKEDKND W RVE            PENAK++QVKASMENGVLTVT
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVT 135          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.016e-35
Identity = 83/140 (59.29%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAPL-----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIPS F  R  +V DPFS DVW PL            S   E   F S +VDWKETPEAHVFKADLPGL          D RVLQISGERSVEKEDKND+W RVE            PENAK+D+VKASMENGVLTVT
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVT 140          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.633e-35
Identity = 80/136 (58.82%), Postives = 88/136 (64.71%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIP  FG R  +V DPFS D+W        P  S S E S F S +VDWKETPEAHVFKAD+PGL          D RVLQISGER+VEKEDKND W RVE            PENAK+++VKASMENGVLTVT
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVT 136          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.867e-35
Identity = 79/136 (58.09%), Postives = 91/136 (66.91%), Query Frame = 1
Query:   85 MSLIPSIFGNR---SVLDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIP IFG+R   S+ DPFS DV+ P        ++S E S FA+ ++DWKETPE HVFK DLPGL          + RVLQISGER+VEKEDKNDKW R+E            PENAK+DQVKASMENGVLTVT
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVT 136          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.001e-34
Identity = 82/143 (57.34%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAP---------LGSSS-----NEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIP+ FG R  +V DPFS DVW P         L S+S      E S F S +VDWKETPEAHVFKAD+PGL          D +VLQISGER+VEKEDKND W RVE            PENAK++QVKASMENGVLTVT
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVT 143          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.966e-34
Identity = 77/140 (55.00%), Postives = 90/140 (64.29%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAPL------------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTV 462
            MSLIPSIFG R  +V DPFS D+W P              S++ +V+ F +A+VDWKETPEAHVFKADLPGL          D  VLQISGERS E E+KNDKW RVE            PENAK+++VKA+MENGVLTV
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTV 140          
The following BLAST results are available for this feature:
BLAST of CX306403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HSP11_SOYBN3.324e-3863.7017.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE4.799e-3760.2917.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_SOLPE1.824e-3662.5017.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_MEDSA9.051e-3658.5718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP13_SOYBN1.182e-3560.0017.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA2.016e-3559.2918.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP14_SOYBN2.633e-3558.8217.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLLC5.867e-3558.0917.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP16_SOYBN1.001e-3457.3418.5 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ARATH4.966e-3455.0018.1 kDa class I heat shock protein OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC18017F10Rv Drought1 Citrus clementina cDNA clone C18017F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306403 ID=CX306403; Name=CX306403; organism=Citrus clementina; type=EST; length=466bp
GCGGGATCGGTAAAGAGTGAAGACCCAATTGATAAATAAGCAAACGATTT
CGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAATGTCTTTGATTCCAT
CTATATTCGGAAACAGGAGCGTGCTCGACCCATTTTCCTCGGACGTTTGG
GCGCCCCTTGGCTCATCCAGCAATGAGGTGTCAACATTTGCCAGTGCTCA
AGTCGATTGGAAAGAAACCCCGGAAGCTCATGTTTTCAAGGCGGATCTTC
CGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTAAGGACGGGAGAGTC
CTTCAGATCAGCGGTGAGAGAAGCGTCGAGAAGGAAGACAAAAACGACAA
ATGGCGCCGTGTTGAGAGGGGCCGCGGCAAGTTCCTGAGGAGGTTCCGGT
TGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGAGAATGGT
GTCCTCACCGTCACTG
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