CX306405

Overview
NameCX306405
Unique NameCX306405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX306405_ssr12 microsatellite CX306405_ssr12:12..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX306405 vs. ExPASy Swiss-Prot
Match: PAP7_ARATH (Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.475e-28
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:   94 EGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISY 318
            +GK V+V+KF+VRGLNLL+G+  I ASFKI+SKS V+I Y++STI P+QLMN+FRKN DLLLGIFNP+G  EISY
Sbjct:  175 QGKTVHVLKFDVRGLNLLDGEFRIVASFKISSKSSVEITYESSTIKPDQLMNIFRKNMDLLLGIFNPEGLFEISY 249

HSP 2 Score: 35.4242 bits (80), Expect = 3.475e-28
Identity = 12/21 (57.14%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  402 YVDDTMRIGRDDKGNIFILER 464
            Y+D+ +++GRD KGN+F+LER
Sbjct:  249 YLDEDLQVGRDGKGNVFVLER 269
The following BLAST results are available for this feature:
BLAST of CX306405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAP7_ARATH3.475e-2869.33Probable plastid-lipid-associated protein 7, chlor... [more]
back to top
Properties
Property NameValue
Genbank descriptionC18017F12Rv Drought1 Citrus clementina cDNA clone C18017F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306405 ID=CX306405; Name=CX306405; organism=Citrus clementina; type=EST; length=534bp
GCGGGATGGTAATTTATTTATTTTTTCATCAATTGTGTACAGTGTAGCAT
CATCTGTTTTTGCTGGTTTCGATATTTGTGATGCGAAAAAATGGAGGGTA
AAGCAGTTAATGTGATCAAGTTCAATGTGAGGGGATTGAATCTGTTGAAT
GGGCAGCTGACAATTGAAGCCTCTTTCAAGATTGCATCTAAATCGAGGGT
TGACATTGCTTATGACAACTCAACAATCACTCCAGAACAGCTGATGAACA
TGTTTCGGAAGAACTATGATCTTCTGCTTGGTATCTTCAATCCGGATGGT
TGGCTGGAGATTTCGTATCCTTTTTACTTTCTCCTGGTTGAAAACTTGAT
ACTGAAAAGACAATATTGTGCTTTCTTAATTCCTTGATTCATTATCATAG
ATATGTTGATGATACAATGAGAATAGGGAGAGATGACAAAGGCAATATCT
TCATATTAGAGAGATCATCTTCAGCGGGAGAAAATGTGGTGGAATAATCA
AACTCGTTTCCACGTATTTTCCAGTCATTATGAA
back to top