CX306408

Overview
NameCX306408
Unique NameCX306408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:528..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306408 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.857e-24
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 2
Query:    8 GKKLILSPYDNST-IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSDRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVL 358
            G  +I S  D+   +VR STD+N+ FV +    + C+   +W++DNYD S+ +W++TT G+ G PG  TL +WFK+EK  + G YK   CPSVC+SC  LCS +GR S +DG  RL L
Sbjct:   83 GTPVIFSNADSKDDVVRVSTDVNIEFVPIRD--RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG-YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CX306408 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   47 IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSDRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRDDEP 376
            +VR STDLN+ F   +    +     +W++D YD S+ ++F+T GG+ G+PG ET+ +WFK+E+    G YK+V CP+VC SC   C  VG +  + G RRL L   D+P
Sbjct:  104 VVRVSTDLNINFSAFMPC--RWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLAL--SDKP 209          
BLAST of CX306408 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.500e-12
Identity = 44/122 (36.07%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    8 GKKLILSPYDN--STIVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSDRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRD 367
            G+ +I S   N    IV ES DLN++F   ++    CNE   WKVD +      W +T GG  G+ G E+  + FK++K  LP +YK   CPS   + +  C++V  F  +  +RRL+L  D
Sbjct:   57 GEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAGLPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CX306408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC4.857e-2445.7621 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU4.704e-1941.82Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA2.500e-1236.07Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18017G03Rv Drought1 Citrus clementina cDNA clone C18017G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306408 ID=CX306408; Name=CX306408; organism=Citrus clementina; type=EST; length=431bp
GCGGGGGGGAAAGAAATTAATACTGTCACCATATGACAATTCTACAATTG
TCAGAGAATCCACTGATCTCAACTTGAGATTCGTAGGGTTACTATCTGGA
AGTAAGCAATGTAACGAGCTACCGTTGTGGAAAGTTGATAACTATGATGC
TTCATCAGACAGATGGTTTATAACAACCGGGGGACTTGATGGTCACCCTG
GAGCTGAAACGCTGCTAAATTGGTTTAAGCTTGAGAAAACTAATCTACCA
GGTGCATACAAAATTGTTCATTGTCCATCTGTTTGCGAGTCTTGCGTCAA
ACTCTGCAGCAGCGTTGGCCGCTTTTCGTTTGAGGATGGCGTTCGACGTC
TGGTTCTGGTTCGTGATGATGAGCCGGCTTTTCCTGTTGTGTTAATTCCA
GCTAGAGAAAGATCGACGTCTGTGTAATCAA
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