CX306410

Overview
NameCX306410
Unique NameCX306410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX306410_ssr267 microsatellite CX306410_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX306410 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = -2 
Query:  305 IDENSTVYIDASPKGDNLVYRVQKNGGFVDAATGRKSDVLIQIPNGPRT--DPSQAV 469
            IDEN TVYIDA+P  D L YRV   GG V+A TG+KSD+LIQ+PNG  T  D +QAV
Sbjct:  841 IDENCTVYIDAAPHKDELAYRVDNRGGLVNAETGQKSDILIQVPNGAATGSDAAQAV 897
The following BLAST results are available for this feature:
BLAST of CX306410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HS101_ORYSJ1.465e-1263.16Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
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Properties
Property NameValue
Genbank descriptionC18017G05Rv Drought1 Citrus clementina cDNA clone C18017G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306410 ID=CX306410; Name=CX306410; organism=Citrus clementina; type=EST; length=473bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTGATATCTACTCAAATGTA
CGATATTTATTTCGATTAAAAACAAATCCAAGACAAAGGGAAGGTCCCTT
AACGTTTTCGCATTTTACAAACATAACAAGAGAAGATACCCTCCACCTAT
TAACATTTTCACAGTTGGAAACAAAATAAAATTCAGCAAATTACAAAATA
AAACCTTCAGACTCCAACACAAACTCTTCAAACACTTGTGAATTGTCAGT
TCAGTCGTCAACCATCTCATCATCATCAACAATTTCTTCAATCTTCATCT
TCTTCACAGCCTGCGACGGATCAGTCCGCGGGCCATTGGGGATTTGAATT
AATACATCAGATTTCCGCCCAGTAGCTGCGTCCACAAACCCTCCATTTTT
CTGAACCCGGTACACCAAATTATCGCCCTTTGGACTGGCGTCTATGTACA
CTGTTGAGTTCTCGTCAATCCCG
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