CX306418

Overview
NameCX306418
Unique NameCX306418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.123e-30
Identity = 66/133 (49.62%), Postives = 92/133 (69.17%), Query Frame = -1
Query:  123 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNP--SERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 515
            G+T H+D   LTILLQD  GGLQ+ H + WVDV PVPGALV+N+GD+LQ+++ND++ISVEHRVLAN +  PRIS+A FF+        +YGP  E++S E P  +R  T T+Y   + +K  DG + + Y ++
Sbjct:  234 GLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVA-GPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.916e-30
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = -1
Query:  123 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFF--NPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 515
            G   HTD G +TILLQDD GGLQ+ H   WVDV P PG+LV+NIGD LQ++SND+Y+SVEHR ++N ++  R+SI  FF  +P +   LYGP  EL+S + P ++R  T  D+ +    + LDG + ++ Y++
Sbjct:  232 GTIQHTDIGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISN-NVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHTSYLHNRGLDGTSALSRYKI 363          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.059e-28
Identity = 60/133 (45.11%), Postives = 88/133 (66.17%), Query Frame = -1
Query:  123 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDS--LYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 515
            G + H+D   LT+LL D   GLQ++    W DV  V GAL+INIGD+LQ+++ND++IS+EHRVLAN +   R+S+A FF    R +  +YGP  EL+S E P ++R+ T  DY T F  K LDG + + ++++
Sbjct:  237 GTSQHSDNSFLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPKYRETTIKDYATYFNAKGLDGTSALLHFKI 369          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.518e-27
Identity = 65/137 (47.45%), Postives = 91/137 (66.42%), Query Frame = -1
Query:  123 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDS------LYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 515
            G + H+D G LTIL+QD  GGLQI    +W+DV  +PGALVINI D+LQ+++ND++ SVEHRVLAN  + PRIS+AV F    +        LYGP  ELIS E P  ++++T  D++T  F K+ D  + ++ +RL
Sbjct:  264 GTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLAN-KVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRL 399          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.377e-26
Identity = 58/124 (46.77%), Postives = 83/124 (66.94%), Query Frame = -1
Query:  150 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDS--LYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDG 515
            G + H+D   LT+LL D+  GLQ+     W DV  VPGAL+INIGD+LQ+++ND++IS++HRVLAN +   R+S+A FF+   + +  +YGP  EL+S E P ++R+ T  DY T F  K L G
Sbjct:  237 GTSKHSDGSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVKPNPRVYGPIKELVSEENPPKYRETTIRDYATYFNGKGLGG 360          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.165e-25
Identity = 58/136 (42.65%), Postives = 88/136 (64.71%), Query Frame = -1
Query:  123 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFF-----NPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 515
            G   HTD   LTILL D+ GGLQ+ +   W+DV P P AL+ N+GD LQ++SND+++S+EHR+LAN   EPRIS+A FF     +PS R  +YGP  EL+S   P ++R  T ++    +  ++ +G + +++ R+
Sbjct:  227 GGAQHTDRSFLTILLNDNNGGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFFVHTFTSPSSR--VYGPIKELLSELNPPKYRDTT-SESSNHYVARKPNGNSSLDHLRI 359          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.869e-23
Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = -1
Query:  123 GITSHTDPGPLTILLQ-DDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 515
            G+T H+D   LT+L+Q +D  GLQIK   +WV VKP+P A ++NIGD+L+I++N  Y S+EHR + NS  E R+SIA F N      + GP   L+  +K ARF++LT  +Y    F++ LDGK  ++  R+
Sbjct:  229 GLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKE-RLSIATFHNVGMYKEV-GPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.053e-23
Identity = 56/132 (42.42%), Postives = 88/132 (66.67%), Query Frame = -1
Query:  123 GITSHTDPGPLTILLQ-DDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 515
            G++ H+D   LT+L+Q ++  GL IK  E+WV +KP+ GA V+NIGD+++IMSN  Y S+EHR + N+  E R+SIA F +P E  +  GP P+L+  E   +++ + Y DY+ R    +LDGK+L++  +L
Sbjct:  224 GLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKE-RLSIAAFHDP-EYGTKIGPLPDLVK-ENGVKYKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 6.177e-21
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = -1
Query:  147 GITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELI----SPEKPARFRQLTYTDYVTRFFTKQLDGK 515
            G+ +HTD G + +L QDDK  GLQ+    EWVDV PV  ++V+N+GD L++++N +Y SVEHRVL+ +  E R+SIA F+NP   DS+  P PELI      EK   + +  + DY+  +   +   K
Sbjct:  173 GLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGS-DSVIFPAPELIGKEAEKEKKENYPRFVFEDYMKLYSAVKFQAK 299          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.595e-19
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G+ +HTD   +TIL+ ++  GLQ+   + W DVK +P AL+I+IGD ++IMSN +Y SV HR   N   + R+S  VF  P   + L GP  +LI+ E PA+F+   Y DYV
Sbjct:  219 GVVAHTDMSAITILVPNEVQGLQVHKDDHWYDVKYIPNALIIHIGDQIEIMSNGKYKSVYHRTTVNKD-KTRMSWPVFLEPPP-ELLTGPISKLITDENPAKFKTKKYKDYV 328          
The following BLAST results are available for this feature:
BLAST of CX306418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCH1_ARATH1.123e-3049.621-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_SOLLC1.916e-3047.371-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_ARATH3.059e-2845.111-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO1.518e-2747.45Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH2_ARATH6.377e-2646.771-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH3.165e-2542.65Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
SRG1_ARATH3.869e-2343.94Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA5.053e-2342.42S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
ACCO1_ARATH6.177e-2142.191-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
FLS_PETCR2.595e-1943.75Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]

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Properties
Property NameValue
Genbank descriptionC18017H01Rv Drought1 Citrus clementina cDNA clone C18017H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306418 ID=CX306418; Name=CX306418; organism=Citrus clementina; type=EST; length=515bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTCAATGAGACGAACAAT
TGAATTGTTATTCTTACGTAAGAATAGTTTATACAGGCACAAACAACCAG
ATTTACCAAGTTTTGTTTCTTACAGCCTATAGTAATTCACCAATGTTTTT
CCATCTAACTGTTTTGTGAAGAACCTTGTTACATAGTCTGTGTATGTGAG
CTGCCGAAAACGAGCTGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTC
CATAAAGACTGTCCCTCTCGCTTGGATTGAAGAAAACAGCAATTGAGATT
CGTGGTTCCAGGGACGAATTAGCCAATACTCTATGCTCTACACTTATGTA
TTCATCATTGGACATAATCTGAAGTATATCCCCAATGTTAATAACCAGAG
CTCCTGGAACTGGTTTAACATCCACCCATTCCTCACCATGCTTAATTTGC
AGCCCACCTTTATCATCTTGCAACAAGATTGTCAATGGCCCTGGATCAGT
ATGAGATGTGATCCC
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