CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12865 contig Ccv1_Contig12865:604..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ARATH (Coproporphyrinogen-III oxidase, chloroplastic OS=Arabidopsis thaliana GN=CPX PE=1 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 2.592e-90
Identity = 150/184 (81.52%), Postives = 157/184 (85.33%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VVYGVMPPE         SD+KPGP+PFFAAG+SSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTD TPAYIFEEDVKHFHS QK A DKFDP+FYPRFKKWCDDYFYIKH          FFDDLNDYDQEMLLSFATECANSV+ AYIPI+EKRKD  FT+QHKAWQQLRRG
Sbjct:  141 VVYGVMPPEAYRAAKGSASDQKPGPVPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRQWWFGGGTDFTPAYIFEEDVKHFHSIQKQACDKFDPSFYPRFKKWCDDYFYIKHRDERRGLGGIFFDDLNDYDQEMLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRG 324          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SOYBN (Coproporphyrinogen-III oxidase, chloroplastic OS=Glycine max GN=CPX PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.680e-89
Identity = 150/184 (81.52%), Postives = 156/184 (84.78%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VVYGVMPP+         +D+KPGP+PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDLTPAYIFEEDVKHFHS QK A DKF+PTFYPRFKKWCDDYFYIKH          FFDDLNDYDQEMLLSFATECANSVI AY+PIIEKRKD PF D  KAWQQLRRG
Sbjct:  140 VVYGVMPPDAYRAAKGVPTDQKPGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSIQKQACDKFEPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYLPIIEKRKDLPFNDHQKAWQQLRRG 323          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_TOBAC (Coproporphyrinogen-III oxidase, chloroplastic OS=Nicotiana tabacum GN=CPX PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 7.804e-87
Identity = 148/185 (80.00%), Postives = 155/185 (83.78%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDE-KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VVYGVMPPE         +   KPGPIPFFAAG+SSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTD TPAYIFEEDVKHFHS QK+A DKFD +FYPRFKKWC DYFYIKH          FFDD NDYDQEMLLSF+TECANSVI AYIPI+EKRKDTPFTD+HKAWQQLRRG
Sbjct:  151 VVYGVMPPEAYRAARPTDNGNVKPGPIPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDFTPAYIFEEDVKHFHSVQKAACDKFDASFYPRFKKWCVDYFYIKHRDERRGLGGIFFDDFNDYDQEMLLSFSTECANSVIPAYIPIVEKRKDTPFTDKHKAWQQLRRG 335          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ORYSJ (Coproporphyrinogen-III oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=CPX PE=2 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 3.279e-85
Identity = 145/191 (75.92%), Postives = 155/191 (81.15%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDE-------KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VVYGVMPP+                   K GP+PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDLTP+YI EEDVKHFHS QK A DKFDP+FYPRFKKWCDDYFYIKH          FFDDLNDYDQEMLL+FATECA+SV+ AYIPIIE+RKDTPFT++HKAWQQLRRG
Sbjct:  145 VVYGVMPPDAYRAAKGEAGKNGAAADGPKAGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPSYIIEEDVKHFHSVQKQACDKFDPSFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDLNDYDQEMLLNFATECADSVVPAYIPIIERRKDTPFTEEHKAWQQLRRG 335          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_HORVU (Coproporphyrinogen-III oxidase, chloroplastic OS=Hordeum vulgare GN=CPX PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 2.689e-79
Identity = 130/163 (79.75%), Postives = 141/163 (86.50%), Query Frame = 3
Query:   69 KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            K GP+PFF+AGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPR WWFGGGTDLTP+Y+ EEDVKHFHS QK   DKFDP+FYPRFKKWCDDYFYIKH          FFDDLNDYDQ+MLL+FATECA SVI AYIPIIE+RKDTPF ++ KAWQQ+RRG
Sbjct:  167 KAGPVPFFSAGISSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRSWWFGGGTDLTPSYLIEEDVKHFHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDLNDYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVRRG 329          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_DROME (Coproporphyrinogen-III oxidase OS=Drosophila melanogaster GN=Coprox PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.065e-51
Identity = 91/185 (49.19%), Postives = 120/185 (64.86%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDEKPGP-IPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VV G +PP           + K G  +PFFA+G+S+V+HP+NP  PT+HFNYRYFE +  K      +QWWFGGGTDLTP Y+ E+D  HFH T KSA D+ DPT+YPRFKKWCDDYF IKH          FFDD++  +QE   +F + CA +VI +Y+P++ K K+  + +  + WQ LRRG
Sbjct:  147 VVTGSLPPAAVQQMRARGKNLKEGASLPFFASGVSAVIHPRNPHVPTIHFNYRYFEVETAK----GEKQWWFGGGTDLTPYYLCEKDASHFHQTLKSACDEHDPTYYPRFKKWCDDYFRIKHRNESRGIGGIFFDDIDSPNQEAAFNFVSSCARAVIPSYVPLVRKHKNREYGNNERQWQLLRRG 327          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_HUMAN (Coproporphyrinogen-III oxidase, mitochondrial OS=Homo sapiens GN=CPOX PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 8.435e-49
Identity = 86/163 (52.76%), Postives = 106/163 (65.03%), Query Frame = 3
Query:   69 KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            K G +PF A G+SSV+HPKNP APT+HFNYRYFE +         +QWWFGGG DLTP Y+ +ED  HFH T K A D+  P  YP+FKKWCDDYF+I H          FFDDL+   +E +  F   CA +V+ +YIP+++K  D  FT Q K WQQLRRG
Sbjct:  232 KDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGN----KQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRG 390          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SCHPO (Probable coproporphyrinogen-III oxidase OS=Schizosaccharomyces pombe GN=hem13 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.186e-48
Identity = 87/165 (52.73%), Postives = 109/165 (66.06%), Query Frame = 3
Query:   63 DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            D     +PFFAAGIS V+HP+NP APT H NYRYFE           + WWFGGG DLTP+ +FEED KHFH   K A D+ DPTFYPRFKKW D+YF IKH          FFDDL++ D + L +F  +CA++ + AY+PI+EKRK+  FT+  K +Q +RRG
Sbjct:   90 DRTAKELPFFAAGISMVIHPRNPMAPTTHLNYRYFELV----NSDGKKIWWFGGGADLTPSILFEEDGKHFHKLHKEACDRHDPTFYPRFKKWADEYFLIKHRKETRGIGGIFFDDLSEKDPQELFAFVKDCAHTFLPAYVPIMEKRKNMEFTEDDKEFQLIRRG 250          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RAT (Coproporphyrinogen-III oxidase, mitochondrial OS=Rattus norvegicus GN=Cpox PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.218e-47
Identity = 85/164 (51.83%), Postives = 104/164 (63.41%), Query Frame = 3
Query:   66 EKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            +K G +PF A GISSV+HPKNP+APT+HFNYRYFE +           WWFGGG DLTP Y+  ED  HFH T K A D+  P  YP+FKKWCDDYF+I H          FFDDL+   +E    F   CA +V+ +Y+PI++K  D  +T Q K WQQLRRG
Sbjct:  220 KKDGKLPFTAMGISSVIHPKNPYAPTMHFNYRYFEVEEAD----GKMHWWFGGGCDLTPTYLNREDAVHFHRTLKEACDQHGPDIYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEAFRFVKTCAEAVVPSYVPIVKKHCDDSYTPQDKLWQQLRRG 379          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_MOUSE (Coproporphyrinogen-III oxidase, mitochondrial OS=Mus musculus GN=Cpox PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.297e-46
Identity = 82/163 (50.31%), Postives = 103/163 (63.19%), Query Frame = 3
Query:   69 KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            K   +PF A G+SSV+HPKNP+APT+HFNYRYFE +           WWFGGG DLTP Y+ +ED  HFH T K A D+  P  YP+FKKWCDDYF+I H          FFDDL+   +E    F   CA +V+ +Y+PI++K  D  +T + K WQQLRRG
Sbjct:  221 KDSKLPFTAMGVSSVIHPKNPYAPTMHFNYRYFEVEEADGNT----HWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDIYPKFKKWCDDYFFIVHRGERRGIGGIFFDDLDSPSKEEAFRFVKTCAEAVVPSYVPIVKKHCDDSYTPRDKLWQQLRRG 379          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_ARATH2.592e-9081.52Coproporphyrinogen-III oxidase, chloroplastic OS=A... [more]
HEM6_SOYBN1.680e-8981.52Coproporphyrinogen-III oxidase, chloroplastic OS=G... [more]
HEM6_TOBAC7.804e-8780.00Coproporphyrinogen-III oxidase, chloroplastic OS=N... [more]
HEM6_ORYSJ3.279e-8575.92Coproporphyrinogen-III oxidase, chloroplastic OS=O... [more]
HEM6_HORVU2.689e-7979.75Coproporphyrinogen-III oxidase, chloroplastic OS=H... [more]
HEM6_DROME1.065e-5149.19Coproporphyrinogen-III oxidase OS=Drosophila melan... [more]
HEM6_HUMAN8.435e-4952.76Coproporphyrinogen-III oxidase, mitochondrial OS=H... [more]
HEM6_SCHPO4.186e-4852.73Probable coproporphyrinogen-III oxidase OS=Schizos... [more]
HEM6_RAT1.218e-4751.83Coproporphyrinogen-III oxidase, mitochondrial OS=R... [more]
HEM6_MOUSE2.297e-4650.31Coproporphyrinogen-III oxidase, mitochondrial OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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