CX308511

Overview
NameCX308511
Unique NameCX308511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308511 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   46 SDHLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKEDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVA---ATEQGVAGAALSNLRKSANSTAKAHPLWYDGRREVHIHPSSINSQLK 513
            SD+L L+ AYK WQ +  K G +A+  +C + FLS  V+  +  ++ QF  LL+DIG      + +   K+ +  D       +  N  A +  ++ A+LCA LYPNV    + E      +   +R    S         DG   VHIHPSS+N Q++
Sbjct: 1119 SDYLALLQAYKGWQ-LSTKEGVRASYNYCRQNFLSGRVLQEMASLKRQFTELLSDIGFAREGLRAREIEKRAQGGDGVLDATGEEANSNAENPKLISAMLCAALYPNVVQVKSPEGKFQKTSTGAVRMQPKSAELKFVTKNDG--YVHIHPSSVNYQVR 1274          
BLAST of CX308511 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.248e-13
Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   46 SDHLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKEDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNV--AATEQGVAGAALSN-LRKSANSTAKAHPLWYDGRREVHIHPSSINSQLK 513
            SD+L L+ AYK WQ +  K   +A+  +C + FLS   +  +  ++ QF  LL+DIG +    + +   K+ +  D       +  N  A +  ++ A+LCA LYPNV    T +G      S  +R    S         DG   VHIHPSS+N Q++
Sbjct: 1121 SDYLALLCAYKGWQ-LSTKESARASYNYCRQNFLSGRTLQEMASLKRQFTELLSDIGFVKEGLRAKEIEKRAQGGDGVLDATGEEANTNAENPKLISAVLCAALYPNVVQVKTPEGKFQKTSSGVVRLQPKSAELKFVTKNDG--YVHIHPSSVNYQVR 1276          
BLAST of CX308511 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 46/154 (29.87%), Postives = 74/154 (48.05%), Query Frame = 1
Query:   40 TQSDHLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKEDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSANSTAKAHPLWYDGRREVHIHPSSIN 501
            T+SDHL ++ A++ W++   +RG +  + +C +YFLSS+ + M+ +M+ QF   L   G +                 S  S +    N+ +++  I+KA++CAGLYP VA          L   RK      K+  L       V IHP S+N
Sbjct:  745 TRSDHLTVVNAFEGWEEAK-RRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFV-----------------SSRSPKDPKANINSDNEKIIKAVICAGLYPKVAKIRLN-----LGKKRKMVKVHTKSDGL-------VSIHPKSVN 868          
BLAST of CX308511 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 45/154 (29.22%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   40 TQSDHLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKEDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSANSTAKAHPLWYDGRREVHIHPSSIN 501
            T+SDHL ++ A++ W++   +RG +  + +C +YFLSS+ + M+ +M+ QF   L   G ++         +  +D +S         N+ +++  I+KA++CAGLYP VA          L   RK      K   L       V +HP S+N
Sbjct:  752 TRSDHLTVVNAFEGWEEAR-RRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVS--------SRNPKDPES---------NINSDNEKIIKAVICAGLYPKVAKIRLN-----LGKKRKMVKVYTKTDGL-------VAVHPKSVN 875          
The following BLAST results are available for this feature:
BLAST of CX308511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DHX57_HUMAN4.288e-1432.08Putative ATP-dependent RNA helicase DHX57 OS=Homo ... [more]
DHX57_MOUSE1.248e-1332.08Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
DHX36_MOUSE4.437e-1129.87Probable ATP-dependent RNA helicase DHX36 OS=Mus m... [more]
DHX36_HUMAN4.437e-1129.22Probable ATP-dependent RNA helicase DHX36 OS=Homo ... [more]
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Properties
Property NameValue
Genbank descriptionC20010G08SK OF2 Citrus clementina cDNA clone C20010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308511 ID=CX308511; Name=CX308511; organism=Citrus clementina; type=EST; length=514bp
GATAAGCTAGAGGGATTAAGTGATTCAAATGACAGTTCAACGCAATCTGA
CCATCTGGTATTGATGGTTGCATACAAGAAATGGCAGAAGATATTGCTCA
AGAGAGGAACTAAGGCCGCCCAGCAGTTCTGCAGCAAATACTTTTTAAGC
AGTTCTGTTATGTACATGATCAGAGATATGAGGATACAGTTTGGAACATT
GCTGGCAGACATTGGACTGATTAATCTTCCAAACAAAAATCAGACTGGGG
GTAAAAAGAAGGAGGACCTCGACAGTTGGTTTTCTGATGAATCACAAATG
TTCAATATGTATGCAAATCATTCCTCTATTGTGAAGGCGATACTATGTGC
TGGTCTGTACCCTAATGTGGCTGCCACTGAGCAAGGAGTTGCTGGAGCTG
CTCTTAGCAACCTTAGAAAGTCCGCTAATTCCACAGCGAAGGCTCATCCA
CTCTGGTATGATGGAAGAAGAGAGGTTCACATACACCCTTCTTCAATAAA
CAGTCAGTTGAAAT
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