CX308514

Overview
NameCX308514
Unique NameCX308514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14574 contig Ccv1_Contig14574:337..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.226e-60
Identity = 106/157 (67.52%), Postives = 125/157 (79.62%), Query Frame = 2
Query:   95 YSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTYT 565
            YS+FTQQELPACKPILTP+WVILTFLV G+ F+P+G+  L AS+ VVEIVDRY+TDCIP ++R + VA+IQ    K C R ITVTK MK PVYVYYQL+NFYQNHRRYVKSRND QL+   +  +   C PED    G+PIVPCGL+AWSLFNDTY+
Sbjct:   30 YSRFTQQELPACKPILTPRWVILTFLVAGVVFIPLGVICLFASQGVVEIVDRYDTDCIPTSSRNNMVAYIQGEGDKICKRTITVTKAMKHPVYVYYQLENFYQNHRRYVKSRNDAQLRSPKEEHDVKTCAPEDNV-GGEPIVPCGLVAWSLFNDTYS 185          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.226e-60
Identity = 106/156 (67.95%), Postives = 126/156 (80.77%), Query Frame = 2
Query:   95 YSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTY 562
            YSKFTQQELPACKPILTP WVI TFL+V + F+P+G+ SL AS+DVVEIVDRY+T+CIP   RT+KVA+IQ    K C R + VTK MK+P+YVYYQL+NFYQNHRRYVKSR+D QL+     ++ S C+PED    G+PIVPCGLIAWSLFNDTY
Sbjct:   30 YSKFTQQELPACKPILTPGWVISTFLIVSVIFIPLGVISLFASQDVVEIVDRYDTECIPAPARTNKVAYIQGDGDKVCNRDLKVTKRMKQPIYVYYQLENFYQNHRRYVKSRSDSQLRSTKYENQISACKPEDDV-GGQPIVPCGLIAWSLFNDTY 184          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.461e-59
Identity = 103/156 (66.03%), Postives = 129/156 (82.69%), Query Frame = 2
Query:   95 YSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTY 562
            YSKFTQQELPACKPILTP WVI TFL++ + F+P+G+ SL AS+DVVEIVDRY++ CIP+++R +KVA+IQ T +K+CTR + V K MK+P+YVYYQL+NFYQNHRRYVKSR+D QL+     ++   C+PED    G+PIVPCGLIAWSLFNDTY
Sbjct:   31 YSKFTQQELPACKPILTPGWVISTFLIISVIFIPLGVISLFASQDVVEIVDRYDSACIPLSDRANKVAYIQGTGNKSCTRTLIVPKRMKQPIYVYYQLENFYQNHRRYVKSRSDSQLRSVKDENQIDACKPEDDF-GGQPIVPCGLIAWSLFNDTY 185          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.950e-56
Identity = 106/172 (61.63%), Postives = 124/172 (72.09%), Query Frame = 2
Query:   98 SKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDV-----------------VEIVDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTY 562
            S+FTQQELPACKPILTPKWVILTFLV G+ F+P+G+  L AS+ V                 +EIVDRY+TDCIP+++R +KV +IQ    K C R ITVTK MK PVYVYYQL+N+YQNHRRYVKSR D QL+      ET  C PEDT   G+PIVPCGL+AWSLFNDTY
Sbjct:   17 SRFTQQELPACKPILTPKWVILTFLVSGVVFIPLGVICLFASQGVCFKSFLTFLSYNYIYFVIEIVDRYDTDCIPLSSRDNKVRYIQGLEDKRCNRTITVTKTMKNPVYVYYQLENYYQNHRRYVKSRQDGQLRSPKDEHETKSCAPEDTL-GGQPIVPCGLVAWSLFNDTY 187          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.221e-51
Identity = 92/156 (58.97%), Postives = 123/156 (78.85%), Query Frame = 2
Query:  101 KFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFI-QSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTYT 565
            +F QQ+LPACKP+LTP  VI  F+++G  F+PIG+ +L ASRD +EI+DRY+ +CIP   RT+K+ +I  S+  K CTR + V K+MK P+++YYQLDN+YQNHRRYVKSR+D+QL    + S TS CEPE+++ NG PIVPCGLIAWS+FNDT+T
Sbjct:   28 QFKQQKLPACKPVLTPISVITVFMLMGFVFIPIGLITLRASRDAIEIIDRYDVECIPEEYRTNKLLYITDSSIPKNCTRYLKVQKYMKAPIFIYYQLDNYYQNHRRYVKSRSDQQLLHGLEYSHTSSCEPEESS-NGLPIVPCGLIAWSMFNDTFT 182          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50A_CHICK (Cell cycle control protein 50A OS=Gallus gallus GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25
Identity = 70/159 (44.03%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  104 FTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPV-----ANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDT 559
            F QQ LPA +PILT   V+  F ++G+ F+PIGI   + S ++ E    YE D   V      N+   V++  ST   TCT   T+    +  V++YY L NFYQNHRRYVKSR+D QL     S  + + +CEP  T  + KPI PCG IA S+FNDT
Sbjct:   42 FKQQRLPAWQPILTAGTVLPAFFIIGLIFIPIGIGIFVTSNNIRE----YEIDYTGVEPSSPCNKCLNVSW-DSTPPCTCTINFTLEHSFESNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDNSSLLNPSKECEPYRTNED-KPIAPCGAIANSMFNDT 194          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50A_MOUSE (Cell cycle control protein 50A OS=Mus musculus GN=Tmem30a PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.357e-24
Identity = 64/155 (41.29%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  104 FTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEI-VDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDT 559
            F QQ LPA +PILT   V+ TF ++G+ F+PIGI   + S ++ EI +D   T+     N+        +  S  CT   T+ +  +  V++YY L NFYQNHRRYVKSR+D QL     +  + + +CEP     + +PI PCG IA S+FNDT
Sbjct:   33 FKQQRLPAWQPILTAGTVLPTFFIIGLIFIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNK----CLSPNVTSCACTINFTLKQSFEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDPSALLNPSKECEPYRRNED-RPIAPCGAIANSMFNDT 182          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50A_PONAB (Cell cycle control protein 50A OS=Pongo abelii GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.726e-24
Identity = 65/155 (41.94%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  104 FTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEI-VDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTTPNGKPIVPCGLIAWSLFNDT 559
            F QQ LPA +PILT   V+  F ++G+ F+PIGI   + S ++ EI +D   T+     N+              CT   T+ K  +  V++YY L NFYQNHRRYVKSR+D QL   S    + + +CEP     + KPI PCG IA S+FNDT
Sbjct:   33 FKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNK----CLSPDVTPCICTINFTLEKSFEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNED-KPIAPCGAIANSMFNDT 182          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50A_HUMAN (Cell cycle control protein 50A OS=Homo sapiens GN=TMEM30A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.479e-24
Identity = 65/155 (41.94%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  104 FTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEI-VDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTTPNGKPIVPCGLIAWSLFNDT 559
            F QQ LPA +PILT   V+  F ++G+ F+PIGI   + S ++ EI +D   T+     N+              CT   T+ K  +  V++YY L NFYQNHRRYVKSR+D QL   S    + + +CEP     + KPI PCG IA S+FNDT
Sbjct:   33 FKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNK----CLSPDVTPCFCTINFTLEKSFEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNED-KPIAPCGAIANSMFNDT 182          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: YNI7_SCHPO (Uncharacterized protein C11B10.07c OS=Schizosaccharomyces pombe GN=SPBC11B10.07c PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.410e-22
Identity = 62/175 (35.43%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   98 SKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANR---------------TDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT----SETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTYT 565
            S+F QQ LPA + I TP  V+    ++GI F P+G    +ASR V E+   Y TDC+ + +                   V  +  ++   CT +  + + M  PV+ +Y+L NFYQNHRRY  S +  QL   ++T         C+P +    GKP  PCG+IA SLFND+Y+
Sbjct:   21 SRFVQQTLPAWQFIFTPWTVLPLLFLLGIVFAPLGAGMFVASRRVKELRIDY-TDCMNIGDEFKQVPSTNIEFQYKNVKNVTAMWKSSGDVCTLRFQIPEEMTSPVFAFYRLKNFYQNHRRYTVSADMFQLLGEARTVAQLKSYGFCKPLEANEEGKPYYPCGIIANSLFNDSYS 194          
The following BLAST results are available for this feature:
BLAST of CX308514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ALIS5_ARATH2.226e-6067.52ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
ALIS3_ARATH2.226e-6067.95ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
ALIS1_ARATH2.461e-5966.03ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS4_ARATH1.950e-5661.63Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS2_ARATH3.221e-5158.97Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
CC50A_CHICK1.363e-2544.03Cell cycle control protein 50A OS=Gallus gallus GN... [more]
CC50A_MOUSE3.357e-2441.29Cell cycle control protein 50A OS=Mus musculus GN=... [more]
CC50A_PONAB5.726e-2441.94Cell cycle control protein 50A OS=Pongo abelii GN=... [more]
CC50A_HUMAN7.479e-2441.94Cell cycle control protein 50A OS=Homo sapiens GN=... [more]
YNI7_SCHPO1.410e-2235.43Uncharacterized protein C11B10.07c OS=Schizosaccha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20010G11SK OF2 Citrus clementina cDNA clone C20010G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308514 ID=CX308514; Name=CX308514; organism=Citrus clementina; type=EST; length=566bp
GAATTCCAATGCGGCGTCGTCCAGCACGGCCAATCCCGACGCTGCTGGAT
CCCCTGATCCTCCGGCTCCCAGGCGAAGCTCTAAGCGACCCAAGTATTCC
AAGTTTACTCAACAGGAGCTTCCGGCTTGCAAGCCGATTCTTACTCCGAA
ATGGGTGATTCTAACATTTTTGGTCGTTGGCATTGCGTTCGTCCCGATTG
GAATTACTTCCCTCCTTGCTTCCCGAGATGTTGTTGAAATTGTTGATCGA
TACGAGACTGATTGCATACCAGTAGCTAATAGGACTGACAAGGTGGCATT
TATTCAGAGTACTGCAAGTAAAACATGCACCAGACAAATTACTGTGACAA
AGCATATGAAGCGGCCTGTCTATGTGTACTATCAACTCGATAATTTCTAC
CAGAATCATCGCAGATATGTTAAGAGCCGAAATGATGAGCAGTTGAAAAA
ACGGAGTAAAACAAGTGAAACATCTCAGTGTGAGCCCGAAGATACCACCC
CAAATGGAAAGCCCATTGTCCCTTGTGGCCTTATTGCTTGGAGTTTGTTT
AACGATACATACACTT
back to top