CX308516

Overview
NameCX308516
Unique NameCX308516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:115..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.501e-32
Identity = 70/123 (56.91%), Postives = 79/123 (64.23%), Query Frame = 2
Query:  200 VKFASV*-GAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            VKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPSTAQ+KPQ                 +DI+V  G Q+IYSKYA TE+EFN   HLIL+EDD+VGI
Sbjct:   29 VKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGI 151          

HSP 2 Score: 34.6538 bits (78), Expect = 1.501e-32
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  115 MATAQLTASSIKVPARSLTSFDGLKPSS 198
            MA  QLTAS + + ARSL S DGL+ SS
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASS 28          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.479e-24
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  230 SQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+ AQ KPQ                 L ++VK G +V+YSKY  TE+E +G+ HLI++EDD++GI
Sbjct:   42 TSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGI 153          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.859e-15
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            IKPL DRV++K +  EEKT+ G+++P TA+ KPQ                 +++SVK G +V+Y KYA TE+  +G  +LI+RE D++GI
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGI 95          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ                 +++ VK G +VI+SKYA TE++ +G  +L+LRE D++ I
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ                 +++ VK G +VI+SKYA TE++ +G  +L+LRE D++ I
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ                 +++ VK G +VI+SKYA TE++ +G  +L+LRE D++ I
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ                 + + VK G +VIYSKYA TE++++G  +LIL+E D++ +
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAV 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_DESHD (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ                 + + VK G +VIYSKYA TE++++G  +LIL+E D++ +
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAV 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_THETN (10 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ                 ++  VK G +VI+SKYA TE++ +G  +L+LRE D++ I
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXL-DISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++KPL DRVLVK    EEKT GG+F+P TA+ KP                  L  ++VK G  V++SKYA TE++ +G  HL++REDD++ I
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMREDDILAI 93          
The following BLAST results are available for this feature:
BLAST of CX308516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CH10C_ARATH1.501e-3256.9120 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL7.479e-2449.1120 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_RHOMR4.859e-1542.2210 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_THEPX8.288e-1543.3310 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP38.288e-1543.3310 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR8.288e-1543.3310 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_DESHY8.288e-1542.8610 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_DESHD8.288e-1542.8610 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_THETN5.372e-1443.3310 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH10_DESVM7.016e-1443.4810 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20010H01SK OF2 Citrus clementina cDNA clone C20010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308516 ID=CX308516; Name=CX308516; organism=Citrus clementina; type=EST; length=566bp
ATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACT
CGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCACTCT
GCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAG
GTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAAACCGTCTTCCAG
TCAAGTTCGCTTCCGTCTGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGC
TTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAA
ACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAA
CTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAACCTCAAGCA
GGTGAGGTGGTAGCTGTTGGCTAGGGGAAGACAGTTGGGAAGACTAAACT
GGACATATCTGTGAAGCCTGGGACCCAAGTCATCTATTCGAAGTATGCAT
GGACTGAGTTGGAGTTCAATGGCGCACATCATCTCATATTGAGGGAGGAT
GACGTAGTTGGCATTC
back to top