CX308516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 1.501e-32 Identity = 70/123 (56.91%), Postives = 79/123 (64.23%), Query Frame = 2 Query: 200 VKFASV*-GAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 VKF+S+ G Q FRRL PKYTSIKPLGDRVLVKIK EEKT GGI LPSTAQ+KPQ +DI+V G Q+IYSKYA TE+EFN HLIL+EDD+VGI Sbjct: 29 VKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGI 151 HSP 2 Score: 34.6538 bits (78), Expect = 1.501e-32 Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 115 MATAQLTASSIKVPARSLTSFDGLKPSS 198 MA QLTAS + + ARSL S DGL+ SS Sbjct: 1 MAATQLTASPVTMSARSLASLDGLRASS 28
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 7.479e-24 Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 2 Query: 230 SQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 + RSFR L KYTS+KPLGDRVL+K K VEEKT GIFLP+ AQ KPQ L ++VK G +V+YSKY TE+E +G+ HLI++EDD++GI Sbjct: 42 TSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGI 153
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.859e-15 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 IKPL DRV++K + EEKT+ G+++P TA+ KPQ +++SVK G +V+Y KYA TE+ +G +LI+RE D++GI Sbjct: 6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGI 95
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15 Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2 Query: 296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 +KPLGDRV+VK+ EE T GG+ LP TA+ KPQ +++ VK G +VI+SKYA TE++ +G +L+LRE D++ I Sbjct: 3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAI 92
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15 Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2 Query: 296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 +KPLGDRV+VK+ EE T GG+ LP TA+ KPQ +++ VK G +VI+SKYA TE++ +G +L+LRE D++ I Sbjct: 3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAI 92
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15 Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2 Query: 296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 +KPLGDRV+VK+ EE T GG+ LP TA+ KPQ +++ VK G +VI+SKYA TE++ +G +L+LRE D++ I Sbjct: 3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAI 92
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15 Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 2 Query: 293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 +IKPLGDRV++K +EEKT GI +P TA+ KPQ + + VK G +VIYSKYA TE++++G +LIL+E D++ + Sbjct: 2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAV 92
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_DESHD (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groS PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15 Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 2 Query: 293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 +IKPLGDRV++K +EEKT GI +P TA+ KPQ + + VK G +VIYSKYA TE++++G +LIL+E D++ + Sbjct: 2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAV 92
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_THETN (10 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groS PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14 Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2 Query: 296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 +KPLGDRV+VK+ EE T GG+ LP TA+ KPQ ++ VK G +VI+SKYA TE++ +G +L+LRE D++ I Sbjct: 3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAI 92
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14 Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2 Query: 293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXL-DISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565 ++KPL DRVLVK EEKT GG+F+P TA+ KP L ++VK G V++SKYA TE++ +G HL++REDD++ I Sbjct: 2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMREDDILAI 93 The following BLAST results are available for this feature:
BLAST of CX308516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 131
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308516 ID=CX308516; Name=CX308516; organism=Citrus clementina; type=EST; length=566bpback to top |