CX308518

Overview
NameCX308518
Unique NameCX308518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig32 contig Ccv1_Contig32:78..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_PRUPE (Profilin OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.449e-68
Identity = 118/131 (90.08%), Postives = 128/131 (97.71%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQAYVDDHL+CEIEGNHLSAAAIIGHDGSVWAQS  FPQLKPEE+TGI+NDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KK++ AL+IGIYDEPMTPGQCNMIVERLGDYL++QGL
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGHDGSVWAQSATFPQLKPEEVTGILNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKSTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF2_MALDO (Profilin-2 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.208e-67
Identity = 117/131 (89.31%), Postives = 127/131 (96.95%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQAYVDDHL+CEIEGNHLSAAAIIGH+GSVWAQS  FPQLKPEE+TGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPG VIRGKKGPGGVT+KK++ AL+IGIYDEPMTPGQCNM+VERLGDYLI+QGL
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGHNGSVWAQSATFPQLKPEEVTGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGVVIRGKKGPGGVTVKKSTMALLIGIYDEPMTPGQCNMVVERLGDYLIEQGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF2_AMBAR (Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.766e-67
Identity = 119/130 (91.54%), Postives = 125/130 (96.15%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQAYVDDHL+CEIEGNHLSAAAIIGHDG VWAQS  FPQ+KPEEITGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT+ ALIIGIYDEPM PGQCNMIVERLGDYL++QG
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGHDGVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMALIIGIYDEPMAPGQCNMIVERLGDYLLEQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF2_HEVBR (Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 8.391e-67
Identity = 119/130 (91.54%), Postives = 125/130 (96.15%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQAYVDDHL+CEIEGNHLSAAAIIG DGSVWAQS NFPQ K EEITGIM+DF+EPGTLAPTGLY+GGTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLIDQG
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGQDGSVWAQSANFPQFKSEEITGIMSDFHEPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF1_AMBAR (Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.441e-66
Identity = 117/130 (90.00%), Postives = 125/130 (96.15%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQAYVDDHL+CEIEGNHLSAAAIIGHDG VWAQS  FPQ+KPEEITGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT+ +LIIGIYDEPMTPGQCNM+VER GDYL++QG
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGHDGVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMSLIIGIYDEPMTPGQCNMLVERPGDYLLEQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_FRAAN (Profilin OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.189e-66
Identity = 116/131 (88.55%), Postives = 125/131 (95.42%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+CEIEGNHLSAAAIIG DGSVWAQS  FPQLKPEE+TGI+ DF+EPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ AL+IGIYDEPMTPGQCNMIVERLGDYL++QGL
Sbjct:    1 MSWQTYVDDHLMCEIEGNHLSAAAIIGQDGSVWAQSATFPQLKPEEVTGIVRDFDEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.439e-66
Identity = 117/131 (89.31%), Postives = 123/131 (93.89%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+CEIEGNHL++AAIIG DGSVWAQS  FPQ KPEEIT IMNDFNEPG+LAPTGLYL GTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQTYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSSTFPQFKPEEITAIMNDFNEPGSLAPTGLYLSGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF1_PHAVU (Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 7.103e-66
Identity = 115/131 (87.79%), Postives = 125/131 (95.42%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHLLCEIEGNHL+ AAI+G DGSVWA+S +FPQ KPEEITGIMNDFNEPGTLAPTGLY+GGTKYMVIQGEPG+VIRGKKGPGGVT+KKT+ AL+IGIYDEPMTPGQCNMIVERLGDYLI+QGL
Sbjct:    1 MSWQTYVDDHLLCEIEGNHLTHAAILGQDGSVWAKSASFPQFKPEEITGIMNDFNEPGTLAPTGLYIGGTKYMVIQGEPGSVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF1_SOYBN (Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.277e-66
Identity = 117/130 (90.00%), Postives = 123/130 (94.62%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQAYVDDHLLC+IEGNHL+ AAIIG DGSVWAQS +FPQ KPEEIT IMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT AALIIGIYDEPMTPGQCNM+VER GDYLIDQG
Sbjct:    1 MSWQAYVDDHLLCDIEGNHLTHAAIIGQDGSVWAQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERPGDYLIDQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF2_SOYBN (Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.582e-65
Identity = 117/130 (90.00%), Postives = 122/130 (93.85%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQAYVDDHLLC IEGNHL+ AAIIG DGSVW QS +FPQ KPEEIT IMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT AALIIGIYDEPMTPGQCNM+VERLGDYLIDQG
Sbjct:    1 MSWQAYVDDHLLCGIEGNHLTHAAIIGQDGSVWLQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERLGDYLIDQG 130          
The following BLAST results are available for this feature:
BLAST of CX308518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PROF_PRUPE4.449e-6890.08Profilin OS=Prunus persica PE=1 SV=1[more]
PROF2_MALDO2.208e-6789.31Profilin-2 OS=Malus domestica PE=1 SV=1[more]
PROF2_AMBAR3.766e-6791.54Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=... [more]
PROF2_HEVBR8.391e-6791.54Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1[more]
PROF1_AMBAR2.441e-6690.00Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1... [more]
PROF_FRAAN3.189e-6688.55Profilin OS=Fragaria ananassa PE=1 SV=1[more]
PROF1_RICCO5.439e-6689.31Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1[more]
PROF1_PHAVU7.103e-6687.79Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1[more]
PROF1_SOYBN9.277e-6690.00Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1[more]
PROF2_SOYBN1.582e-6590.00Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC20010H03SK OF2 Citrus clementina cDNA clone C20010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308518 ID=CX308518; Name=CX308518; organism=Citrus clementina; type=EST; length=612bp
AAAATAAAAAAAAATTCACAGAGAAATCAGAGGAATCTTCAAAGCAGAAA
AAGATGTCGTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAATTGA
GGGTAACCATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGCGTTT
GGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAACTGGT
ATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAACTGGACTGTA
TCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCTGTCA
TCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAGTGCG
GCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGTGCAA
CATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTTAGG
TGGTTTGCATGTCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAAAAGC
TCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTCAAAGTTATGG
GAACTGTGTGTGGAAAGGAAAGGTTTGGTGCATGTGGAAGTTCTTGATAT
CATCTATTTGTA
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