CX308522
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_SYNY3 (Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 3.430e-39 Identity = 81/163 (49.69%), Postives = 106/163 (65.03%), Query Frame = 1 Query: 1 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GGQVFYV+PRI+G+EE L+Q P IAI HGQ +LE TM F G IL+CT I+E+GLDI NTIIV+D Q+FGLAQLYQLRGRVGR+ +AHA+L YP++ L+++ G G+QLA +DM IR G + G +Q+G + +G Sbjct: 855 GGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIG 1017
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAW (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MW2) GN=mfd PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GQVFY+ +++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ G GF++A +D+ IR G + G+QQ G + VG Sbjct: 828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAS (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MSSA476) GN=mfd PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GQVFY+ +++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ G GF++A +D+ IR G + G+QQ G + VG Sbjct: 828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAR (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MRSA252) GN=mfd PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GQVFY+ +++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ G GF++A +D+ IR G + G+QQ G + VG Sbjct: 828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAN (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain N315) GN=mfd PE=1 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GQVFY+ +++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ G GF++A +D+ IR G + G+QQ G + VG Sbjct: 828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAM (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=mfd PE=1 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GQVFY+ +++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ G GF++A +D+ IR G + G+QQ G + VG Sbjct: 828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAC (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain COL) GN=mfd PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GQVFY+ +++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ G GF++A +D+ IR G + G+QQ G + VG Sbjct: 828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAB (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=mfd PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GQVFY+ +++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ G GF++A +D+ IR G + G+QQ G + VG Sbjct: 828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAA8 (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain NCTC 8325) GN=mfd PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GQVFY+ +++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ G GF++A +D+ IR G + G+QQ G + VG Sbjct: 828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAA3 (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain USA300) GN=mfd PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489 GQVFY+ +++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ G GF++A +D+ IR G + G+QQ G + VG Sbjct: 828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989 The following BLAST results are available for this feature:
BLAST of CX308522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308522 ID=CX308522; Name=CX308522; organism=Citrus clementina; type=EST; length=491bpback to top |