CX308522

Overview
NameCX308522
Unique NameCX308522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_SYNY3 (Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.430e-39
Identity = 81/163 (49.69%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GGQVFYV+PRI+G+EE    L+Q  P   IAI HGQ    +LE TM  F  G   IL+CT I+E+GLDI   NTIIV+D Q+FGLAQLYQLRGRVGR+  +AHA+L YP++  L+++              G G+QLA +DM IR  G + G +Q+G +  +G
Sbjct:  855 GGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIG 1017          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAW (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MW2) GN=mfd PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GQVFY+  +++ + E  + LQ   P  +IA+AHGQ   R LEETM  F      IL+ T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR+ +  +AY  +P   +L++               G GF++A +D+ IR  G + G+QQ G +  VG
Sbjct:  828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAS (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MSSA476) GN=mfd PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GQVFY+  +++ + E  + LQ   P  +IA+AHGQ   R LEETM  F      IL+ T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR+ +  +AY  +P   +L++               G GF++A +D+ IR  G + G+QQ G +  VG
Sbjct:  828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAR (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MRSA252) GN=mfd PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GQVFY+  +++ + E  + LQ   P  +IA+AHGQ   R LEETM  F      IL+ T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR+ +  +AY  +P   +L++               G GF++A +D+ IR  G + G+QQ G +  VG
Sbjct:  828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAN (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain N315) GN=mfd PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GQVFY+  +++ + E  + LQ   P  +IA+AHGQ   R LEETM  F      IL+ T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR+ +  +AY  +P   +L++               G GF++A +D+ IR  G + G+QQ G +  VG
Sbjct:  828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAM (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=mfd PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GQVFY+  +++ + E  + LQ   P  +IA+AHGQ   R LEETM  F      IL+ T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR+ +  +AY  +P   +L++               G GF++A +D+ IR  G + G+QQ G +  VG
Sbjct:  828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAC (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain COL) GN=mfd PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GQVFY+  +++ + E  + LQ   P  +IA+AHGQ   R LEETM  F      IL+ T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR+ +  +AY  +P   +L++               G GF++A +D+ IR  G + G+QQ G +  VG
Sbjct:  828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAAB (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=mfd PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GQVFY+  +++ + E  + LQ   P  +IA+AHGQ   R LEETM  F      IL+ T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR+ +  +AY  +P   +L++               G GF++A +D+ IR  G + G+QQ G +  VG
Sbjct:  828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAA8 (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain NCTC 8325) GN=mfd PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GQVFY+  +++ + E  + LQ   P  +IA+AHGQ   R LEETM  F      IL+ T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR+ +  +AY  +P   +L++               G GF++A +D+ IR  G + G+QQ G +  VG
Sbjct:  828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: MFD_STAA3 (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain USA300) GN=mfd PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    4 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTGDVGNVG 489
            GQVFY+  +++ + E  + LQ   P  +IA+AHGQ   R LEETM  F      IL+ T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR+ +  +AY  +P   +L++               G GF++A +D+ IR  G + G+QQ G +  VG
Sbjct:  828 GQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVG 989          
The following BLAST results are available for this feature:
BLAST of CX308522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MFD_SYNY33.430e-3949.69Transcription-repair-coupling factor OS=Synechocys... [more]
MFD_STAAW3.674e-3341.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAS3.674e-3341.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAR3.674e-3341.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAN3.674e-3341.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAM3.674e-3341.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAC3.674e-3341.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAB3.674e-3341.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAA83.674e-3341.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAA33.674e-3341.36Transcription-repair-coupling factor OS=Staphyloco... [more]

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Properties
Property NameValue
Genbank descriptionC20010H07SK OF2 Citrus clementina cDNA clone C20010H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308522 ID=CX308522; Name=CX308522; organism=Citrus clementina; type=EST; length=491bp
GGTGGGCAGGTTTTTTATGTCTTGCCTCGCATAAAAGGACTCGAAGAACC
AATGGATTTTCTTCAACAAGCGTTTCCGGGTGTTGATATAGCTATTGCAC
ATGGGCAGCAATATTCCAGGCAGCTTGAGGAAACAATGGAGAAATTTGCA
CAAGGTGCTATCAAAATTCTTATATGCACAAACATAGTAGAAAGTGGGCT
TGACATTCAAAATGCAAATACCATCATAGTTCAGGACGTTCAACAATTTG
GGCTAGCACAGTTGTATCAGTTGCGTGGAAGGGTGGGCCGGGCTGATAAG
GAAGCTCATGCCTACTTATTTTATCCTGATAAGTCACTGCTTTCCGACCA
AGCGCTAGAAAGGCTTGCAGCTCTTGAAGAATGCCGTGAACTTGGCCAAG
GTTTCCAACTTGCGGAGAAAGACATGGGCATAAGACGCTTTGGCACCATA
TTCGGTGAGCAGCAGACAGGTGATGTTGGAAATGTTGGTGT
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