CX308555

Overview
NameCX308555
Unique NameCX308555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308555 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.694e-23
Identity = 62/140 (44.29%), Postives = 80/140 (57.14%), Query Frame = -3
Query:    2 SYGGSSMDHNYQPWSYTESSMDHSHQPTSYAGSSAHHSHQPMSYAGSSAHHNYQRP-------------QQATRFADNYNTLDEVISALREAGLESSNLILGIDFTKSNEWTGKYSFNRKSLHVISNIRNPYEQAISIIG 382
            SYG       Y   S   +    ++ P     SS  H +    YA +++  NY  P             ++ ++ +DNY++L +V  AL  AGLESSNLI+GIDFTKSNEWTG  SFNRKSLH +SN  NPYEQAI+IIG
Sbjct:   61 SYGPQYSQEGYA--SQPNNPPPPTYAPAPSPASSYGHQYSQEGYASAASQPNYPPPPSQSQVADRKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIG 198          
BLAST of CX308555 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.691e-22
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = -3
Query:    2 PSYGGSSMDHNYQPW-SYTESSMDHSHQPTSYAG---SSAHHSHQPMSYAGSSAHHNYQRPQQATRFADNYNTLDEVISALREAGLESSNLILGIDFTKSNEWTGKYSFNRKSLHVISNIRNPYEQAISIIG 385
            P YG  S  +NY P  SY +        P  Y+    S+  +S  P    GS      +R  + ++ +D+Y++L++V  AL  AGLESSNLI+GIDFTKSNEWTG  SFNRKSLH I +  NPYEQAI+IIG
Sbjct:   37 PQYGAES--YNYPPPPSYAQPPEYTQPPPPLYSTQPYSAPSYSAPPSQSYGSDNKKRLER--KYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIG 164          
BLAST of CX308555 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = -3
Query:    2 NYNTLDEVISALREAGLESSNLILGIDFTKSNEWTGKYSFNRKSLHVISNIR-NPYEQAISIIG 190
            ++ TLD+++ A++ AGLE SNLI GID+TKSN + G+ +F+++ LH I     NPY+Q I I+G
Sbjct: 7298 HFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVG 7361          
The following BLAST results are available for this feature:
BLAST of CX308555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG1_ARATH5.694e-2344.29E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
RGLG2_ARATH3.691e-2247.73E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
CPNA2_CAEEL1.718e-1148.44Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionC21001C06Rv AbsLeaSub1 Citrus clementina cDNA clone C21001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308555 ID=CX308555; Name=CX308555; organism=Citrus clementina; type=EST; length=612bp
GACCAATTATAGAGATTGCTTGCTCATACGGATTACGGATGTTACTAATG
ACATGAAGGCTCTTCCGGTTGAATGAATACTTGCCTGTCCACTCATTGCT
CTTTGTAAAGTCAATGCCAAGTATTAAATTTGATGATTCAAGGCCAGCTT
CTCGTAGAGCAGAAATTACCTCATCCAAGGTGTTGTAATTGTCAGCAAAT
CTTGTAGCTTGCTGCGGACGTTGATAGTTATGATGCGCTGAACTTCCTGC
ATAGGACATAGGTTGATGACTATGATGCGCCGAACTTCCTGCATAGGATG
TAGGCTGATGACTATGATCCATCGAACTTTCTGTGTAAGACCACGGTTGA
TAATTATGATCCATCGAACTTCCACCATAAGATGGCCTTTGATGCCGAAA
ATATTCATGAGAATCATCATCATAACCGGATTCTGTATTTCCCATGGCTA
AAGAATTATATACCGAACAATTGAAGGAATACACAGCTATCAAATGAATA
ATACCCACAACACAAATAAACAAATGATGAATGAAGAAGAGGGTCTCTTA
GCAGTAACAGAACAGAGAGATAGAGAGAAAGAAGAAAGAAGCAGCTGCTG
AAAGATTCCCCG
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