CX308558

Overview
NameCX308558
Unique NameCX308558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308558 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 1.575e-53
Identity = 101/114 (88.60%), Postives = 109/114 (95.61%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 342
            KDYQSDHKF+ITTYSPTGV ITSSG+KKG+LFLADVNTQLKNKN+TTD+KVDT SNLFTTITVDE APGLKTILSF+VPDQRSGK+E+QYLHDYAGI TSVGLTANPIVNFS V
Sbjct:   21 KDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGV 134          
BLAST of CX308558 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 3.285e-51
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 342
            KDY SD KFTI+TYSPTGVAITSSGTKKGELFL DVNTQLKNKNITTD+KVDT SNLFTTITV+EPAPG+K ILSFKVP+Q SGKVELQYLH+YAGIS+SVGL ANPIVNFS+V
Sbjct:   21 KDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSV 134          
BLAST of CX308558 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 6.195e-50
Identity = 94/114 (82.46%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 342
            +DY SDHKFT+TTYS TGVAIT+SG KKGELFLADV+TQLKNKNITTD+KVDT SN++TTITVDEPAPGLKTI SF VPDQ+SGKVELQYLH+YAGI+TS+GLTA+P+VNFS V
Sbjct:   21 RDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGV 134          
BLAST of CX308558 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 1.530e-40
Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 342
            +DYQ D KF++TTYS TGVAIT++GT KG LFL DV TQ+KN N T D+KV T S+L TT+T DEPAPGLK I+  K+PD +SGK E+QY HDYAGISTSVG TA PIVNFS V
Sbjct:   21 RDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGV 134          
BLAST of CX308558 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 2.609e-40
Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 342
            KD+ SD KF+ITT+SP GVAITS+GTKKG+L L DV  Q + KNITTDLKV T S    T TVDE APGL++I SFKVPDQ SGKVELQYLH+YAGISTS+GLT NP VNFS V
Sbjct:   21 KDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGV 134          
BLAST of CX308558 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 1.691e-39
Identity = 73/114 (64.04%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAV 342
            +DYQ+DHKFT+TTY+  GVAIT++ TKK +L   ++ +Q+KNKNIT D+K ++ SN+ TT+TVDE  PGLK+ILSF VPDQRSGK ELQY HDYAG+S S+GLTA+P+VN S+V
Sbjct:   20 RDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSV 133          
BLAST of CX308558 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.885e-39
Identity = 75/113 (66.37%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFS 336
            +DYQ+DHKFT+TTY+  G AIT++ TKK +L + ++ +Q+KNKNIT D+K ++ASN+ TTIT D+  APGLKTILSF VPDQ+SGKVELQYLHDYAGI+ S+GLTANP+VN S
Sbjct:   20 RDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLS 132          
BLAST of CX308558 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.533e-32
Identity = 65/113 (57.52%), Postives = 88/113 (77.88%), Query Frame = 1
Query:    1 KDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFS 336
            KDY +  KF +TT SP GVAIT++GT+K E    +++TQ+KNK +T D+K ++ S+L TTITVDE   PGLK+I++  VPDQRSGK+E QYLH+YAG++ SVGL +NP+VN S
Sbjct:   21 KDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLS 133          
The following BLAST results are available for this feature:
BLAST of CX308558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC1_SOLTU1.575e-5388.60Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA3.285e-5186.84Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC2_SOLTU6.195e-5082.46Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC2_ARATH1.530e-4068.42Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ARATH2.609e-4071.93Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ1.691e-3964.04Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT2.885e-3966.37Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE1.533e-3257.52Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionC21001C09Rv AbsLeaSub1 Citrus clementina cDNA clone C21001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308558 ID=CX308558; Name=CX308558; organism=Citrus clementina; type=EST; length=344bp
AAGGATTATCAGAGCGACCACAAGTTCACTATCACTACCTACTCTCCGAC
TGGAGTTGCTATTACATCATCTGGAACGAAAAAGGGTGAGCTGTTTCTAG
CTGATGTTAATACCCAGCTGAAGAACAAGAATATCACAACTGATCTCAAA
GTGGACACTGCCTCCAATCTTTTCACAACTATCACTGTTGATGAACCTGC
TCCTGGGCTGAAAACGATCCTAAGCTTCAAAGTTCCAGATCAAAGGTCTG
GCAAGGTTGAACTCCAGTATTTGCATGATTATGCGGGGATAAGCACAAGT
GTCGGCTTAACAGCGAATCCTATTGTTAACTTCTCGGCTGTGAT
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