CX308566

Overview
NameCX308566
Unique NameCX308566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length357
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.570e-14
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 2
Query:  143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 256
            QVAPYK+VR+VAFV  IPKN SGKILRKDLIKLATSKL
Sbjct:  515 QVAPYKKVRKVAFVTDIPKNASGKILRKDLIKLATSKL 552          

HSP 2 Score: 29.261 bits (64), Expect = 6.570e-14
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:    9 GSRLSENEVMDFVARQV 59
            GS LSE EVM+FVA+QV
Sbjct:  500 GSNLSEREVMEFVAKQV 516          
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.440e-13
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 250
            QVAPYKR+R+VAFV+SIPKNPSGKILRKDLIK+ATS
Sbjct:  507 QVAPYKRIRKVAFVSSIPKNPSGKILRKDLIKIATS 542          

HSP 2 Score: 26.5646 bits (57), Expect = 1.440e-13
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3
Query:    3 EAGSRLSENEVMDFVARQV 59
            + GS LSE  +M+FVA+QV
Sbjct:  490 KTGSSLSEKTIMEFVAKQV 508          
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 1.965e-12
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 2
Query:  143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 256
            QV+PYK++R+V F+ASIPKNPSGKILR++L KL TSKL
Sbjct:  528 QVSPYKKIRKVTFLASIPKNPSGKILRRELTKLTTSKL 565          

HSP 2 Score: 28.4906 bits (62), Expect = 1.965e-12
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 3
Query:    3 EAGSRLSENEVMDFVARQV 59
            + GS LSE+E+M FVA+QV
Sbjct:  511 KVGSNLSESEIMGFVAKQV 529          
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL3_ARATH (4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 2.674e-11
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 2
Query:  143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 256
            QVAPYK++R+VAF++SIPK  SGK LRKDLIKL+TSKL
Sbjct:  515 QVAPYKKIRKVAFISSIPKTASGKTLRKDLIKLSTSKL 552          

HSP 2 Score: 24.6386 bits (52), Expect = 2.674e-11
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3
Query:   12 SRLSENEVMDFVARQV 59
            S LSE EV+DF++ QV
Sbjct:  501 SNLSEKEVIDFISNQV 516          
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 7.592e-11
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 2
Query:  143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 256
            QVAPYK++R+V+F+ SIPK  SGK LRKDLIKLATSKL
Sbjct:  513 QVAPYKKIRKVSFINSIPKTASGKTLRKDLIKLATSKL 550          

HSP 2 Score: 24.2534 bits (51), Expect = 7.592e-11
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 3
Query:   12 SRLSENEVMDFVARQV 59
            S LSE +V+DF+++QV
Sbjct:  499 SNLSEKQVIDFISKQV 514          
The following BLAST results are available for this feature:
BLAST of CX308566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
4CLL4_ORYSJ6.570e-1486.844-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
4CLL5_ARATH1.440e-1388.894-coumarate--CoA ligase-like 5 OS=Arabidopsis thal... [more]
4CLL2_ARATH1.965e-1273.684-coumarate--CoA ligase-like 2 OS=Arabidopsis thal... [more]
4CLL3_ARATH2.674e-1176.324-coumarate--CoA ligase-like 3 OS=Arabidopsis thal... [more]
4CLL4_ARATH7.592e-1176.324-coumarate--CoA ligase-like 4 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC21001D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308566 ID=CX308566; Name=CX308566; organism=Citrus clementina; type=EST; length=357bp
GGGAAGCTGGAAGTCGATTATCAGAGAATGAAGTCATGGATTTTGTAGCA
AGACAGGTGTTTTAGATCGTATTGGTCGGAAATATTTAAAGGCTTTTGAA
TTAGTTATGGAACAGTTAATTTAGCAGTTTTGTTTAAACTTTCAGGTTGC
CCCATACAAGAGGGTTCGGAGAGTGGCATTTGTAGCTTCAATACCCAAGA
ATCCATCAGGCAAGATTCTCAGGAAGGATCTCATCAAGCTTGCGACATCC
AAACTTTGAATGCCTGGGGCTTTTGCCCAAAGAGAGGGCCTCAAACAGAG
AAGTAGTGGTTCTATTTCTCATTCAACATCTTGTTTATGCCTGTAGCAAA
ATTATGC
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