CX308617

Overview
NameCX308617
Unique NameCX308617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig662 contig Ccv1_Contig662:899..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.566e-40
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = -2
Query:   70 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKD 321
            ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+RMNPGIEVFPPK+
Sbjct:  138 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKE 221          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.739e-31
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = -2
Query:   70 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKD 321
            ARRGQATDSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VNTR++  ++    KD
Sbjct:  260 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKD 343          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.472e-30
Identity = 71/106 (66.98%), Postives = 77/106 (72.64%), Query Frame = -2
Query:   10 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT--RMNPGIEVFPPKDFTQQTFDTAGMPFGSQATRE 321
            ARRGQATD HSLAERARREKISE+M  LQD++PGCNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VN+     P I VFP  D      D     +  Q   E
Sbjct:  155 ARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPIDVHRTIYEQQEANE 260          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.594e-30
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = -2
Query:   70 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN-TRMNPGIEVFPPKD 321
            ARRGQATDSHSLAER RREKI ERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VN TR++  ++    KD
Sbjct:  303 ARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKD 387          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.246e-29
Identity = 66/87 (75.86%), Postives = 73/87 (83.91%), Query Frame = -2
Query:   61 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQ 321
            ARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV GKA++LDEIINY+QSLQRQVEFLSMKL  VN +M+  +E    KD  Q
Sbjct:  305 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQ 391          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.736e-29
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = -2
Query:  103 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRM 321
            ARRGQATDSHSLAERARREKISERM +LQDLVPGCN++ GKA++LDEIINY+QSLQRQVEFLSMKL  VN RM
Sbjct:  193 ARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRM 265          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.378e-28
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = -2
Query:   61 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQ 321
            ARRGQAT+SHSLAER RREKISERM++LQ+LVPGCNK+ GKA++LDEIINY+QSLQ+QVEFLSMKL  VN  +N  I+    KD  Q
Sbjct:  208 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQ 294          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.070e-28
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = -2
Query:   46 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDT 321
            ARRGQAT+SHSLAER RREKISERMK LQDLVPGC+KV GKA++LDEIINY+QSLQ Q+EFLSMKL AVN  ++  +E    KD  Q +  T
Sbjct:  225 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSAPT 316          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.394e-27
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = -2
Query:  106 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 321
            ARRGQATDSHS+AER RREKISERMK LQDLVPGC+K+ GKA +LDEIINY+QSLQRQ+EFLSMKL  VN R
Sbjct:  174 ARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPR 245          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH064_ARATH (Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.561e-27
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = -2
Query:   67 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDF 321
            ARRGQATD HSLAERARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+Q LQRQVEFLSMKL  +N  +   +E    K F
Sbjct:  187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVEDVSVKQF 271          
The following BLAST results are available for this feature:
BLAST of CX308617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
BPE_ARATH4.566e-4097.62Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH062_ARATH1.739e-3179.76Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH079_ARATH1.472e-3066.98Transcription factor bHLH79 OS=Arabidopsis thalian... [more]
BH078_ARATH5.594e-3077.65Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH049_ARATH1.246e-2975.86Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH077_ARATH4.736e-2984.93Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH074_ARATH1.378e-2871.26Transcription factor bHLH74 OS=Arabidopsis thalian... [more]
BH076_ARATH3.070e-2869.57Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH063_ARATH3.394e-2781.94Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BH064_ARATH7.561e-2770.59Transcription factor bHLH64 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC21001H11Rv AbsLeaSub1 Citrus clementina cDNA clone C21001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308617 ID=CX308617; Name=CX308617; organism=Citrus clementina; type=EST; length=322bp
ACGGCTGTATTCTCTTGTAGCTTGAGAACCAAATGGCATGCCCGCAGTAT
CAAATGTTTGTTGAGTAAAATCTTTAGGAGGAAATACCTCAATGCCAGGG
TTCATTCTTGTATTGACTGCTTCAAGCTTCATTGACAGAAACTCAACCTG
CCGCTGTAGCGATTGGATGTAGTTAATTATCTCATCCAGGACCAATGCTT
TGCCGATGACCTTGTTACAACCAGGAACCAAGTCCTGGAGAATTTTCATC
CTTTCGCTTATCTTTTCTCTCCTAGCTCTTTCTGCTAAACTGTGGCTATC
AGTAGCTTGGCCCCTTCTTGCT
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