CX308655

Overview
NameCX308655
Unique NameCX308655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:877..1257. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 5.883e-64
Identity = 109/127 (85.83%), Postives = 117/127 (92.13%), Query Frame = 1
Query:    1 VFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGAF 381
            V C+YG PLLVVNGFLVLIT LQHTHP+LPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY+FD TPF KAMWREA+EC+YVEPD+  ++KG F
Sbjct:  251 VVCVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVF 377          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 8.495e-63
Identity = 107/125 (85.60%), Postives = 113/125 (90.40%), Query Frame = 1
Query:    7 CIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGAF 381
            C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAME TKAIKPILG+YYQFDGTP+ KAMWREAKEC+YVEPD   + KG F
Sbjct:  254 CLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAKECIYVEPDRQGEKKGVF 378          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.227e-61
Identity = 104/127 (81.89%), Postives = 114/127 (89.76%), Query Frame = 1
Query:    1 VFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGAF 381
            + C+YG PLL+VNGFLV IT LQHTH +LPHY SSEWDW +GALAT+DRDYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT AIKPILGEYYQFD TPFYKA+WREA+ECLYVEPDEG   KG +
Sbjct:  255 LLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVY 381          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 4.661e-61
Identity = 105/127 (82.68%), Postives = 114/127 (89.76%), Query Frame = 1
Query:    1 VFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGAF 381
            + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP+Y AM+REAKEC+YVEPD     KG +
Sbjct:  251 MICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYVEPDREGDKKGVY 377          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 5.177e-44
Identity = 77/127 (60.63%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 VFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGAF 381
            V CIYG P+L V  F  +IT L HTH SLPHY SSEW+W RGAL+T+DRD+G LN V H++T THV HHLFS +PHYHA EA  AI  +LG++Y+ D TP  KAMWREAKEC+++EP++G  +KG +
Sbjct:  244 VTCIYGIPVLGVFIFFDIITYLHHTHLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAKECIFIEPEKGRGSKGVY 370          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.041e-32
Identity = 67/115 (58.26%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   22 PLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 363
            P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  281 PYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.041e-32
Identity = 67/115 (58.26%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   22 PLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 363
            P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  281 PYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.038e-23
Identity = 59/129 (45.74%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    1 VFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY----QFDGTPFY--KAMWREAKECLYVEPDEGD 363
            +F IYG P L+   +L  +T L H      LP Y   EW + RG L TVDRDYG+ N + H+I  THV HHLF  +PHYH  EATKA KP+LG+YY    +    PF+  K + R  K+  YV  D G+
Sbjct:  235 MFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVS-DSGE 361          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.043e-21
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   10 IYGGPLLVVNGFLVLITLLQH---THPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            +YG P L+   +L  +T L H   TH  LP Y   EW + RG L TVDRDYG +N V H+I  THV HHLF  +PHYH +EATK+ K +LG+YY+
Sbjct:  238 LYGVPYLIFVMWLDFVTYLHHHGYTH-KLPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDI-GTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYR 330          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.372e-20
Identity = 47/97 (48.45%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    1 VFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            V  +YG P  +   +L  +T L H   H  LP Y   EW + RG L TVDRDYG +  + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  238 VLKLYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSYLRGGLTTVDRDYGWIYNIHHDI-GTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYR 333          
The following BLAST results are available for this feature:
BLAST of CX308655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FD6E2_SOYBN5.883e-6485.83Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU8.495e-6385.60Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN1.227e-6181.89Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH4.661e-6182.68Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL5.177e-4460.63Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS2.041e-3258.26Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP2.041e-3258.26Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD3E_TOBAC5.038e-2345.74Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU8.043e-2151.58Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN1.372e-2048.45Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC21002D04Rv AbsLeaSub1 Citrus clementina cDNA clone C21002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308655 ID=CX308655; Name=CX308655; organism=Citrus clementina; type=EST; length=381bp
GTGTTCTGCATCTATGGAGGACCTTTGCTGGTAGTGAACGGATTTCTCGT
TTTGATCACATTGTTGCAGCACACTCACCCTTCACTGCCACATTACCATT
CTTCAGAATGGGACTGGTTCCGAGGAGCCCTGGCAACTGTTGATAGAGAC
TATGGGATCTTGAACAAGGTCTTCCATAACATTACTGATACTCATGTAGC
TCACCATTTGTTTTCAACAATGCCACATTATCATGCAATGGAGGCTACGA
AGGCAATAAAGCCAATTTTGGGAGAATATTATCAGTTCGATGGGACTCCA
TTTTATAAGGCAATGTGGAGGGAAGCAAAGGAGTGTCTTTACGTTGAACC
AGACGAAGGTGACCAGAACAAAGGTGCCTTC
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