CX308676

Overview
NameCX308676
Unique NameCX308676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length222
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:78..299. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308676 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.749e-20
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = -3
Query:    2 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTDFCFVEEISKTNPY 217
            T  FF+GIKNQA + CEGK FYTR AF+SA+++YP F    T    KRE+AAFFAHVTHET  FC++ EI+K+N Y
Sbjct:   85 TDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAY 160          
BLAST of CX308676 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.481e-19
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = -3
Query:    2 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEF----GRTDTKREVAAFFAHVTHETTDFCFVEEISKTNPY 217
            T  FF+GIKNQA + CEGK FYTR AF+SA+  YP F     +   KRE+AAFFAH THET  FC++ EI+K+N Y
Sbjct:   74 TSSFFNGIKNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAY 149          
BLAST of CX308676 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.647e-18
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = -3
Query:   20 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEI 217
            TPEFF  +  QA   C  KGFYTRDAF++A   YP FGRT    D+KRE+AAFFAH  HET  FC++EEI
Sbjct:   73 TPEFFAALVAQADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEI 142          
BLAST of CX308676 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.061e-17
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = -3
Query:   20 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEI 217
            T +F +GI +QA + C GK FYTRDAF+SAL+SY +FGR     D+KRE+AA FAH THET  FC++EEI
Sbjct:   73 TADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEI 142          
BLAST of CX308676 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.267e-17
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = -3
Query:   17 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEEIS 217
            T  FF+GIKNQAP  C GK FYTR +F++A  SY  F R     D+KRE+AAFFAHVTHET   C++ EI+
Sbjct:   92 TEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEIN 162          
BLAST of CX308676 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.879e-17
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = -3
Query:    8 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFG----RTDTKREVAAFFAHVTHETTDFCFVEEISKTN 217
            T  FF+GIKNQAP  C GK FYTR +F++A  SY  F       D+KRE+AAFFAHVTHET   C++ EI+  N
Sbjct:   89 TEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGAN 162          
BLAST of CX308676 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 8.984e-17
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = -3
Query:   23 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEE 217
            T EF+DGI +QA A C GK FYTR  F+ A+S+YP FG      D KRE+AA+FAHVTHET   C++EE
Sbjct:   51 TQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEE 119          
BLAST of CX308676 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 8.984e-17
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = -3
Query:   17 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDTKREVAAFFAHVTHETTDFCFVEEIS 217
            T  FF+GI NQA   C GK FYTRD+FI+A +++P F  + T+RE+A  FAH THET  FC++EEI+
Sbjct:   77 TQAFFNGIINQAGGGCAGKNFYTRDSFINAANTFPNFANSVTRREIATMFAHFTHETGHFCYIEEIN 143          
BLAST of CX308676 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.930e-15
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = -3
Query:   23 FFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEE 208
            FFDGI  QA A+C GK FYTR AF+SA+   P+FG      D KRE+AAFFAH++HETT+ C +EE
Sbjct:   95 FFDGIIGQAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEE 158          
The following BLAST results are available for this feature:
BLAST of CX308676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CHIA_MAIZE1.749e-2060.53Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE1.481e-1957.89Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ3.647e-1860.00Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU1.061e-1760.00Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI5_ORYSJ5.267e-1757.75Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ6.879e-1755.41Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA8.984e-1757.97Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA8.984e-1755.22Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIP_BETVU4.930e-1559.09Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
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Properties
Property NameValue
Genbank descriptionC21002F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308676 ID=CX308676; Name=CX308676; organism=Citrus clementina; type=EST; length=222bp
AATAAGGATTTGTCTTACTAATCTCTTCTACGAAGCAAAAATCTGTTGTT
TCATGAGTGACATGGGCAAAAAATGCGGCAACTTCACGCTTAGTATCAGT
TCTACCGAATTCAGGATATGAACTGAGAGCACTAATAAATGCATCTCTTG
TATAGAACCCCTTCCCTTCACAAGTTGCTGGAGCCTGATTCTTAATGCCG
TCAAAAAATTCCGGAGTCCCCG
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