CX308697

Overview
NameCX308697
Unique NameCX308697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15354 contig Ccv1_Contig15354:214..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = -3
Query:  205 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 366
            GQT+PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct:   52 GQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.491e-24
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = -3
Query:  205 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 366
            GQT+PVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct:   52 GQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.945e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_CANGY (60S ribosomal protein L44 OS=Candida glycerinogenes GN=RPL44 PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG +L
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECVACKTKLQLSLKRCKHFELGGDKKQKGAAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_PICJA (60S ribosomal protein L44 OS=Pichia jadinii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_PICGU (60S ribosomal protein L44 OS=Pichia guilliermondii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_DEBHA (60S ribosomal protein L44 OS=Debaryomyces hansenii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG +L
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG +L
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_CAEEL (60S ribosomal protein L44 OS=Caenorhabditis elegans GN=rpl-41 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLR++C  CKH  Q PIKRCKHFE+GG KK +G
Sbjct:   51 GQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRG 100          
The following BLAST results are available for this feature:
BLAST of CX308697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL44_GOSHI2.813e-2698.1560S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
RL36A_ARATH4.491e-2492.5960S ribosomal protein L36a OS=Arabidopsis thaliana... [more]
RL44_PHARH6.945e-1769.8160S ribosomal protein L44 OS=Phaffia rhodozyma GN=... [more]
RL44_CANGY1.547e-1671.7060S ribosomal protein L44 OS=Candida glycerinogene... [more]
RL44_PICJA2.021e-1671.7060S ribosomal protein L44 OS=Pichia jadinii GN=RPL... [more]
RL44_PICGU2.021e-1671.7060S ribosomal protein L44 OS=Pichia guilliermondii... [more]
RL44_DEBHA2.021e-1671.7060S ribosomal protein L44 OS=Debaryomyces hansenii... [more]
RL44_COPCI2.021e-1669.8160S ribosomal protein L44 OS=Coprinopsis cinerea G... [more]
RL44_COPC72.021e-1669.8160S ribosomal protein L44 OS=Coprinopsis cinerea (... [more]
RL44_CAEEL2.021e-1672.0060S ribosomal protein L44 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC21002G11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308697 ID=CX308697; Name=CX308697; organism=Citrus clementina; type=EST; length=368bp
TTTTTTTTTTTTTTTTTTTTTTGGTCAAAAAATCCAAATCTAAAATTAAC
TGATATAATAAGCACTTAACAAACAACAGCTTCAAGTTTTAAATTAACAG
CACCAAACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAAA
GTTCCATCAAGTGCAGCAAAGTAAAAAGCATAAAAACAAAAATTAAGGCA
TTTAGAAAAGAGATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAAG
TGCTTGCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGCA
TTGGAGCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAGA
CAGGCTCGGTCTGACCAC
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