CX308733

Overview
NameCX308733
Unique NameCX308733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length222
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:78..299. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308733 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.984e-20
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = -3
Query:    2 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSPYPEFGRTDT----KREVAAFFAHVTHETTDFCFVEEISKTNPY 217
            T  FF+GIKNQA + CEGK FYTR AF+SA++ YP F    T    KRE+AAFFAHVTHET  FC++ EI+K+N Y
Sbjct:   85 TDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAY 160          
BLAST of CX308733 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.526e-19
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = -3
Query:    2 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSPYPEF----GRTDTKREVAAFFAHVTHETTDFCFVEEISKTNPY 217
            T  FF+GIKNQA + CEGK FYTR AF+SA+  YP F     +   KRE+AAFFAH THET  FC++ EI+K+N Y
Sbjct:   74 TSSFFNGIKNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAY 149          
BLAST of CX308733 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.221e-18
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = -3
Query:   20 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSPYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEI 217
            TPEFF  +  QA   C  KGFYTRDAF++A   YP FGRT    D+KRE+AAFFAH  HET  FC++EEI
Sbjct:   73 TPEFFAALVAQADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEI 142          
BLAST of CX308733 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.033e-17
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = -3
Query:   20 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSPYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEI 217
            T +F +GI +QA + C GK FYTRDAF+SAL+ Y +FGR     D+KRE+AA FAH THET  FC++EEI
Sbjct:   73 TADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEI 142          
BLAST of CX308733 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.532e-16
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = -3
Query:   23 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSPYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEE 217
            T EF+DGI +QA A C GK FYTR  F+ A+S YP FG      D KRE+AA+FAHVTHET   C++EE
Sbjct:   51 TQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEE 119          
BLAST of CX308733 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.532e-16
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = -3
Query:   17 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSPYPEFGRTDTKREVAAFFAHVTHETTDFCFVEEIS 217
            T  FF+GI NQA   C GK FYTRD+FI+A + +P F  + T+RE+A  FAH THET  FC++EEI+
Sbjct:   77 TQAFFNGIINQAGGGCAGKNFYTRDSFINAANTFPNFANSVTRREIATMFAHFTHETGHFCYIEEIN 143          
BLAST of CX308733 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.001e-16
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = -3
Query:   17 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSPYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEEIS 217
            T  FF+GIKNQAP  C GK FYTR +F++A   Y  F R     D+KRE+AAFFAHVTHET   C++ EI+
Sbjct:   92 TEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEIN 162          
BLAST of CX308733 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.614e-16
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = -3
Query:    8 TPEFFDGIKNQAPATCEGKGFYTRDAFISALSPYPEFG----RTDTKREVAAFFAHVTHETTDFCFVEEISKTN 217
            T  FF+GIKNQAP  C GK FYTR +F++A   Y  F       D+KRE+AAFFAHVTHET   C++ EI+  N
Sbjct:   89 TEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGAN 162          
BLAST of CX308733 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.930e-15
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = -3
Query:   23 FFDGIKNQAPATCEGKGFYTRDAFISALSPYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEE 208
            FFDGI  QA A+C GK FYTR AF+SA+   P+FG      D KRE+AAFFAH++HETT+ C +EE
Sbjct:   95 FFDGIIGQAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEE 158          
The following BLAST results are available for this feature:
BLAST of CX308733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CHIA_MAIZE2.984e-2060.53Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE2.526e-1957.89Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ6.221e-1860.00Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU4.033e-1758.57Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_DIOJA1.532e-1657.97Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA1.532e-1655.22Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI5_ORYSJ2.001e-1656.34Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ2.614e-1654.05Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU4.930e-1559.09Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
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Properties
Property NameValue
Genbank descriptionC21003B12Rv AbsLeaSub1 Citrus clementina cDNA clone C21003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308733 ID=CX308733; Name=CX308733; organism=Citrus clementina; type=EST; length=222bp
AATAAGGATTTGTCTTACTAATCTCTTCTACGAAGCAAAAATCTGTTGTT
TCATGAGTGACATGGGCAAAAAATGCGGCAACTTCACGCTTAGTATCAGT
TCTACCGAATTCAGGATATGGACTGAGAGCACTAATAAATGCATCTCTTG
TATAGAACCCCTTCCCTTCACAAGTTGCTGGAGCCTGATTCTTAATGCCG
TCAAAAAATTCCGGAGTCCCCG
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