CX308743

Overview
NameCX308743
Unique NameCX308743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:676..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB1_ARATH (Thioredoxin reductase 1 OS=Arabidopsis thaliana GN=NTR1 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 2.747e-45
Identity = 89/118 (75.42%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            GSKVYIIHRRD+FRASKIMQ RAL+NPKIDVIWNS V+EAYG+               TG VSDLKVSGLFFAIGHEPATKFLDG ++L SDGY++TKPGTT TSVPGVFAAGDVQDK
Sbjct:  182 GSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDK 299          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB2_ARATH (Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.363e-44
Identity = 88/118 (74.58%), Postives = 96/118 (81.36%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            GSKVYIIHRRD+FRASKIMQ RAL+NPKI+VIWNS V+EAYG+               TG VSDLKVSGLFFAIGHEPATKFLDGQL+L  DGY++TKPGTT TSV GVFAAGDVQDK
Sbjct:  232 GSKVYIIHRRDTFRASKIMQQRALSNPKIEVIWNSAVVEAYGDENGRVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDK 349          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_SCHPO (Thioredoxin reductase OS=Schizosaccharomyces pombe GN=trr1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.583e-27
Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            GSKVY++ RRD  RAS IM  R L NPK++V+WN+V  EA G+               T +VSDL+V+GLF+AIGH PATK +  Q++L   GYI T  GT  TS+PG FAAGDVQDK
Sbjct:  177 GSKVYVLVRRDKLRASPIMAKRLLANPKVEVLWNTVAEEAQGDGKLLNNLRIKNTN--TNEVSDLQVNGLFYAIGHIPATKLVAEQIELDEAGYIKTINGTPRTSIPGFFAAGDVQDK 292          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_RICFE (Thioredoxin reductase OS=Rickettsia felis GN=trxB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.674e-26
Identity = 63/117 (53.85%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            SKV I HRRDSFRA KI+Q+R   NPKI VIW+ VV E  G                T ++S +  SG+F AIGH P T    GQ+ +  D YIITK GTT TSV GVFAAGDVQDK
Sbjct:  169 SKVTITHRRDSFRAEKILQDRLFKNPKISVIWDHVVDEIVGSDKPKSVTGVKIQNVHTKEISLVNCSGVFIAIGHAPNTGLFTGQIAMDDDNYIITKSGTTKTSVEGVFAAGDVQDK 285          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_CANGA (Thioredoxin reductase OS=Candida glabrata GN=TRR1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.674e-26
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 351
            GSKVY+I R+D  RAS IMQ RA  N KI++++N+V LEA G+               T + +DL V+GLF+AIGH PATK ++GQ++    GYI T PG++ TSVPGVFAAGDVQD
Sbjct:  177 GSKVYLIVRKDHLRASTIMQRRAEQNDKIEILYNTVTLEAQGDGKLLNNLRIKNVK--TNEETDLPVNGLFYAIGHTPATKIVEGQVETDETGYIKTIPGSSLTSVPGVFAAGDVQD 291          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_DEBHA (Thioredoxin reductase OS=Debaryomyces hansenii GN=TRR1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.187e-26
Identity = 60/118 (50.85%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            GSKVY++ RRD  RAS IMQ R   N K++++WNS   EA G+               T +  DL V+GLF+AIGH PAT+    QL+     YI+TKPGT  TS+PGVFAAGDVQDK
Sbjct:  177 GSKVYLLVRRDQLRASNIMQKRVQNNDKLEILWNSEAKEAKGDGKLLQNISVYNNK--TKETKDLPVNGLFYAIGHIPATQIFAKQLETDDQNYILTKPGTAETSIPGVFAAGDVQDK 292          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_CHLPN (Thioredoxin reductase OS=Chlamydia pneumoniae GN=trxB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.187e-26
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            GS VY++HRRD  RASK M+ RA  N KI  +WNS +++  G+               T +++  + +G+FFAIGH+P T FL GQL L   GYI+T+ GT+ TSVPGVFAAGDVQDK
Sbjct:  173 GSHVYVVHRRDKLRASKAMEARAQNNEKITFLWNSEIVKISGDSIVRSVDIKNVQ---TQEITTREAAGVFFAIGHKPNTDFLGGQLTLDESGYIVTEKGTSKTSVPGVFAAGDVQDK 287          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_YARLI (Thioredoxin reductase OS=Yarrowia lipolytica GN=TRR1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.730e-26
Identity = 57/118 (48.31%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            GSKVY+I R+D  RAS +M  R  ++PK+++++N V +EA G+               TG+  DL+V+GLF+AIGH PAT  + GQ++   +GY++T PGT +TSV GVFAAGDVQDK
Sbjct:  177 GSKVYVIVRKDKLRASAVMAKRLASHPKVEILFNHVSIEAKGDGKLLNALEIENTL--TGEKRDLEVNGLFYAIGHIPATSIVKGQVETDEEGYVVTVPGTANTSVKGVFAAGDVQDK 292          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_PNECA (Thioredoxin reductase OS=Pneumocystis carinii GN=TRR1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.730e-26
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            +KVY++ RRD  RAS IM  R L +PKI+++WN+V LE+ G+               T +VS+L+V+GLF+AIGHEPAT  + GQ++   DGYIITK G   T++ G FAAGDVQDK
Sbjct:  176 TKVYLLVRRDKLRASPIMAKRLLHHPKIEILWNTVALESLGDNNLMNCVKIKNVK--TQEVSELQVNGLFYAIGHEPATTLVRGQVECDKDGYIITKNGGPETNIKGFFAAGDVQDK 290          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_RICCN (Thioredoxin reductase OS=Rickettsia conorii GN=trxB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.871e-26
Identity = 62/117 (52.99%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            +KV I+HRRDSFRA KI+Q+R   N KI VIW+ VV E  G                T ++S L  SG+F AIGH P T    GQ+ +  D YIITK GTT TSV GVFAAGDVQDK
Sbjct:  169 NKVTIVHRRDSFRAEKILQDRLFKNSKISVIWDHVVDEIVGSNKPKSVTGVKIQNVHTKEISLLNCSGVFIAIGHAPNTGLFTGQIVMDDDNYIITKSGTTRTSVEGVFAAGDVQDK 285          
The following BLAST results are available for this feature:
BLAST of CX308743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
TRXB1_ARATH2.747e-4575.42Thioredoxin reductase 1 OS=Arabidopsis thaliana GN... [more]
TRXB2_ARATH1.363e-4474.58Thioredoxin reductase 2 OS=Arabidopsis thaliana GN... [more]
TRXB_SCHPO2.583e-2753.39Thioredoxin reductase OS=Schizosaccharomyces pombe... [more]
TRXB_RICFE1.674e-2653.85Thioredoxin reductase OS=Rickettsia felis GN=trxB ... [more]
TRXB_CANGA1.674e-2652.99Thioredoxin reductase OS=Candida glabrata GN=TRR1 ... [more]
TRXB_DEBHA2.187e-2650.85Thioredoxin reductase OS=Debaryomyces hansenii GN=... [more]
TRXB_CHLPN2.187e-2650.00Thioredoxin reductase OS=Chlamydia pneumoniae GN=t... [more]
TRXB_YARLI3.730e-2648.31Thioredoxin reductase OS=Yarrowia lipolytica GN=TR... [more]
TRXB_PNECA3.730e-2650.43Thioredoxin reductase OS=Pneumocystis carinii GN=T... [more]
TRXB_RICCN4.871e-2652.99Thioredoxin reductase OS=Rickettsia conorii GN=trx... [more]

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Properties
Property NameValue
Genbank descriptionC21003C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21003C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308743 ID=CX308743; Name=CX308743; organism=Citrus clementina; type=EST; length=355bp
GGATCAAAAGTTTATATAATTCATAGGAGGGATAGTTTTAGAGCTTCGAA
GATTATGCAAAACAGGGCACTTACGAACCCTAAGATTGATGTGATTTGGA
ATTCGGTTGTTTTAGAGGCTTATGGAGAAGGGGATAAGAAGGTTCTGGGA
GGATTGAAGGTGAAGAATTTGGTGACTGGACAGGTTTCTGATTTGAAGGT
GTCTGGCTTGTTCTTTGCCATTGGACACGAGCCTGCTACTAAGTTTTTGG
ATGGTCAGTTGGACCTGCATTCTGATGGTTATATTATTACCAAACCTGGG
ACTACACACACTAGTGTCCCTGGAGTGTTTGCTGCTGGAGATGTTCAGGA
TAAGA
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