CX308771

Overview
NameCX308771
Unique NameCX308771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10289 contig Ccv1_Contig10289:598..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308771 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.111e-38
Identity = 87/158 (55.06%), Postives = 113/158 (71.52%), Query Frame = 3
Query:    9 SLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRAAVLNELEAVDGSVKKLYEVI-QNEVDTVEEELLQKSVLDLGKRADNFSQGLDHLTKAVDGFFKIVLSGRDALLCNLRA 479
            +L+LPKVKNSAKGKVLMRA+YGVKV T+++  +FAAAFSGS++NL+ L VS+ LPWA +F  +Q  +NAE++NI  S    VL ELEAV   VKKLY  I Q  +D +  + L+ SV +L       S G+D ++K VD FFKI+LSGRD LL NLR+
Sbjct:  177 TLNLPKVKNSAKGKVLMRALYGVKVKTLYISGVFAAAFSGSSQNLMYLTVSNELPWAQSFMEVQNTMNAEIKNIFLSDGLTVLKELEAVASGVKKLYPAIQQGSIDPISLQPLKDSVTEL-------SNGIDLVSKEVDCFFKILLSGRDTLLENLRS 327          
BLAST of CX308771 vs. ExPASy Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.052e-21
Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 3
Query:    9 SLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRAAVLNELEAVDGSVKKLYEV------------IQNEVDTVEEELLQKSVLDLG 368
            +L L KVKNSAKGKVLMRA+YG++ +TVFVCSIF A  SGS K L+EL+V +   W+ AF+ L   V+ E+   LS G  A + ELE V+   ++L+ +            + N V   EEE++  S+   G
Sbjct:  181 NLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAFNDLHTAVSEELTRQLSGGSVAAVKELEEVEACARRLHVLASTSQLEEEAANLANAVSHTEEEVMSDSIAQEG 312          
BLAST of CX308771 vs. ExPASy Swiss-Prot
Match: U496D_ORYSI (UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.795e-21
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 3
Query:    9 SLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRAAVLNELEAVDGSVKKLYEV------------IQNEVDTVEEELLQKSVLDLG 368
            +L L KVKNS KGKVLMRA+YG++ +TVFVCSIF A  SGS K L+EL+V +   W+ AF+ L   V+ E+   L+ G  A + ELE V+   K+L+ +            + N V   EEE++  S++  G
Sbjct:  181 NLSLMKVKNSVKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAFNDLHTAVSEELTRQLAGGSVAAVKELEEVEACAKRLHVLASTSQLEEEAANLANAVSHTEEEVMSDSIVQEG 312          
The following BLAST results are available for this feature:
BLAST of CX308771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPS1_ARATH2.111e-3855.06Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
U496D_ORYSJ1.052e-2143.18UPF0496 protein 4 OS=Oryza sativa subsp. japonica ... [more]
U496D_ORYSI1.795e-2142.42UPF0496 protein 4 OS=Oryza sativa subsp. indica GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionC21003F05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308771 ID=CX308771; Name=CX308771; organism=Citrus clementina; type=EST; length=481bp
GCGGGGCTTCTTTGGATTTGCCCAAGGTTAAGAACTCAGCCAAAGGGAAG
GTTTTGATGCGCGCAATGTATGGGGTTAAGGTGTTGACTGTATTTGTTTG
TAGTATTTTTGCTGCAGCCTTCTCTGGATCAGCCAAGAATTTGTTAGAAC
TGAACGTTTCTGACACATTACCTTGGGCACCAGCATTTTCTGCCTTGCAA
GCTAATGTGAATGCAGAAGTTAGGAACATATTATCCTCTGGAAGAGCTGC
AGTTTTGAACGAACTAGAGGCTGTTGATGGGAGCGTTAAGAAATTGTATG
AGGTGATTCAAAATGAGGTTGACACTGTTGAAGAGGAACTGCTCCAGAAA
TCTGTTTTGGATTTGGGAAAGAGGGCAGATAACTTTTCTCAAGGGCTAGA
TCATCTTACAAAGGCAGTGGATGGCTTTTTCAAAATAGTTTTGAGTGGGC
GTGATGCTTTGCTTTGTAATCTAAGAGCAAC
back to top