CX308779

Overview
NameCX308779
Unique NameCX308779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length232
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7404 contig Ccv1_Contig7404:946..1177. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308779 vs. ExPASy Swiss-Prot
Match: DGDG1_ARATH (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DGD1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.950e-31
Identity = 59/75 (78.67%), Postives = 68/75 (90.67%), Query Frame = 2
Query:    2 GHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELIYPN 226
            GHHY+GGFWTDF K +  + KR+VAIVTTASLPWMTGTAVNPLFRAAYLAK  +Q+VTL+VPWLC+SDQEL+YPN
Sbjct:  323 GHHYDGGFWTDFVKPETPENKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKAAKQSVTLVVPWLCESDQELVYPN 397          
BLAST of CX308779 vs. ExPASy Swiss-Prot
Match: DGDG1_LOTJA (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.572e-31
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 2
Query:    2 GHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELIYPN 226
            GH  EGGFWTD  K DLSD +R+VAIVTTASLPWMTGTAVNPLFRAAYL+++E+Q VTLLVPWLCKSDQEL+YP+
Sbjct:  293 GHRNEGGFWTDHAKHDLSDNERHVAIVTTASLPWMTGTAVNPLFRAAYLSQSEKQKVTLLVPWLCKSDQELVYPS 367          
BLAST of CX308779 vs. ExPASy Swiss-Prot
Match: DGDG1_SOYBN (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.491e-30
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 2
Query:    2 GHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELIYPN 226
            GH YEGGFWTD  K D  D +R+VAIVTTASLPWMTGTAVNPLFRAAYL+++ +Q VTLLVPWLCKSDQEL+YP+
Sbjct:  290 GHRYEGGFWTDHAKHDPLDNERHVAIVTTASLPWMTGTAVNPLFRAAYLSQSAKQKVTLLVPWLCKSDQELVYPS 364          
BLAST of CX308779 vs. ExPASy Swiss-Prot
Match: DGDG2_SOYBN (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Glycine max GN=DGD2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.286e-18
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 2
Query:   56 DKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELIYPN 226
            DKK ++AI TTASLPW+TGTAVNPLFRAAYLAK+ +++VTL++PWL   DQ L+YPN
Sbjct:    2 DKKEHIAIFTTASLPWLTGTAVNPLFRAAYLAKSGERDVTLVIPWLSLKDQRLVYPN 58          
BLAST of CX308779 vs. ExPASy Swiss-Prot
Match: DGDG2_LOTJA (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.425e-17
Identity = 38/56 (67.86%), Postives = 49/56 (87.50%), Query Frame = 2
Query:   59 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELIYPN 226
            KK+++AI TTASLPW+TGTAVNPLFRAAYL+K  +++VTL++PWL   DQ L+YPN
Sbjct:    3 KKQHIAIFTTASLPWLTGTAVNPLFRAAYLSKDGERDVTLVIPWLSLKDQALVYPN 58          
BLAST of CX308779 vs. ExPASy Swiss-Prot
Match: DGDG2_ARATH (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DGD2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 34/58 (58.62%), Postives = 48/58 (82.76%), Query Frame = 2
Query:   53 SDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELIYPN 226
            + +++++AI TTAS+PW+TGTAVNPLFRAAYLA   ++ VTL++PWL    Q+L+YPN
Sbjct:    3 NQQEQHIAIFTTASIPWLTGTAVNPLFRAAYLANDGERRVTLVIPWLTLKHQKLVYPN 60          
The following BLAST results are available for this feature:
BLAST of CX308779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DGDG1_ARATH2.950e-3178.67Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_LOTJA6.572e-3180.00Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_SOYBN9.491e-3077.33Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG2_SOYBN1.286e-1870.18Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_LOTJA2.425e-1767.86Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_ARATH2.269e-1558.62Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC21003G01Rv AbsLeaSub1 Citrus clementina cDNA clone C21003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308779 ID=CX308779; Name=CX308779; organism=Citrus clementina; type=EST; length=232bp
AGGACATCATTATGAAGGTGGCTTTTGGACAGACTTTGGAAAGGATGACC
TGTCTGACAAAAAAAGAAATGTTGCCATTGTCACAACTGCTAGTCTTCCA
TGGATGACTGGAACTGCTGTGAATCCACTTTTTCGAGCAGCTTATTTAGC
AAAGACTGAACAACAAAATGTTACACTTTTGGTTCCCTGGCTTTGTAAGT
CGGACCAAGAATTAATTTATCCTAATGTCACT
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