CX308784

Overview
NameCX308784
Unique NameCX308784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length315
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13388 contig Ccv1_Contig13388:365..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308784 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.542e-13
Identity = 48/111 (43.24%), Postives = 62/111 (55.86%), Query Frame = -1
Query:    4 RPAATTMNLFPVS----DNSGQDVSARNMAAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPPPQTAQMTIFYGGQVIVFNDFPADKANEIMQLASNGSSLS 303
            R   TTM+LFP      D+  QDV           +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVIVFNDF A+KA E++ LAS G++ S
Sbjct:   61 RQPTTTMSLFPCEASNMDSMVQDV-----------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANS 160          
BLAST of CX308784 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.654e-11
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = -1
Query:    4 TTMNLFPVSDNSGQDVSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMIDSSLNK-------PPPQTAQMTIFYGGQVIVFNDFPADKANEIMQLASNGSSLS 291
            T MNLFP  + SG D SA       + +   +FP+Q+ F+  + +    D  + K       P  Q+A +TIFYGG+V+VF+DF A+KA E++ LA+ GS+ S
Sbjct:   56 TMMNLFPC-EASGMDSSA----GQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKS 153          
The following BLAST results are available for this feature:
BLAST of CX308784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10A_ARATH3.542e-1343.24Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH5.654e-1138.83Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionC21003G07Rv AbsLeaSub1 Citrus clementina cDNA clone C21003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308784 ID=CX308784; Name=CX308784; organism=Citrus clementina; type=EST; length=315bp
ATGGCTCAGTGAGCTCCCGTTGCTTGCTAATTGCATGATTTCATTTGCTT
TATCAGCAGGAAAATCATTGAACACAATCACTTGTCCGCCATAAAATATA
GTCATTTGAGCAGTTTGCGGAGGGGGCTTGTTTAAACTTGAATCTATCAT
GTTAGGGGTATCATTCTTAGGAGCAAAACCAGCTTGTTGAGGGAACAAAT
TCATTGATTCCCAGTTTCGAGGAGCTGCCATGTTTCGAGCTGAAACATCT
TGTCCAGAGTTGTCACTTACTGGAAACAAATTCATAGTTGTAGCTGCTGG
CCGCCGCGGGATCTC
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