CX308789

Overview
NameCX308789
Unique NameCX308789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4247 contig Ccv1_Contig4247:373..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.707e-69
Identity = 137/233 (58.80%), Postives = 170/233 (72.96%), Query Frame = -2
Query:    1 DQFPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKR--------------GSDEI-EYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 654
            + FP+GLRVLVVDDD T   ILE+MLR CLY VT C++A +AL++LR+ K  FD+V+SDVHMPDMDGFKLLEH+GLEMDLPVIMMSAD   S V++G+ HGA DYLIKP+R E LKNIWQHVVRKR +E    E+SGS+EET   ++              G D + + +SSVNEG      + RKR   + E+ G+ + +D S  KKPRVVWSVELHQQFV+AVNQLG++KA
Sbjct:   31 EMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGNNWR-SSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWSVELHQQFVAAVNQLGVEKA 262          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.708e-68
Identity = 136/226 (60.18%), Postives = 166/226 (73.45%), Query Frame = -2
Query:    1 DQFPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE-NKEHENSGSLEET-------DHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 654
            D FPA LRVLVVDDD T   ILE+ML  CLY VT C++A  AL++LR+ K  FD+V+SDVHMPDMDGFKLLEH+GLEMDLPVIMMSAD   S V++G+ HGA DYLIKP+R E LKNIWQHVVRK+ NE N    + GS+E+T         H+  +D    +SSVNEG     ++ RKR   + +D G+ + +D S+ KKPRVVWSVELHQQFV+AVNQLG+DKA
Sbjct:   22 DPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDAD--NNSSSVNEGNG---RSSRKRKEEEVDDQGD-DKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDKA 241          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR14_ARATH (Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.472e-64
Identity = 133/223 (59.64%), Postives = 156/223 (69.96%), Query Frame = -2
Query:    1 DQFPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESD----DPSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 654
            DQFP+GLR+LVVDDD +   ILE+ML R +Y VT CSQA VAL ILRERK  FD+VLSDVHMP M+G+ LL+ +G LEMDLPVIMMS DGR + VM GI HGACDYLIKPIR EELKNIWQHVVR++    KE  +S +LE  D+   GS E    S      E   K + K+   K   D +   D    DP  +KK RVVWS+ELHQQFV+AVN+LGIDKA
Sbjct:    5 DQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRRKCVMKKELRSSQALE--DNKNSGSLETVVVSVSECSEESLMKCRNKKKKKKRSVDRDDNEDDLLLDPGNSKKSRVVWSIELHQQFVNAVNKLGIDKA 225          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR12_ARATH (Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.140e-59
Identity = 122/220 (55.45%), Postives = 152/220 (69.09%), Query Frame = -2
Query:    1 DQFPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISA--KEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 654
            DQFP G+RVL VDDD T  +ILE +LR C Y+VTT +QA  AL +LRE K  FD+V+SDV MPDMDGFKLLE +GLEMDLPVIM+SA      VM+G+ HGACDYL+KP+R EELKNIWQHVVR R+++N+   N+G     D      +E    S  N G     K  RKR     ++ED+   ++DD    KK RVVW+VELH++FV+AVNQLG +KA
Sbjct:   11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSRFDKNRGSNNNG-----DKRDGSGNEGVGNSDPNNG-----KGNRKRKDQYNEDEDEDRDDNDDSCAQKKQRVVWTVELHKKFVAAVNQLGYEKA 220          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR11_ARATH (Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.169e-58
Identity = 116/216 (53.70%), Postives = 153/216 (70.83%), Query Frame = -2
Query:    7 PAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEI---EYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGID 645
            P GLRVLVVDDD T  +ILE+ML++C Y VTTC  A  AL +LRERK  +D+V+SDV+MPDMDGFKLLEH+GLE+DLPVIMMS DG  S VM+G++HGACDYL+KPIR +ELK IWQHV+RK+  E ++ E  G       ++ G+D I   + A  +  G + +F  +RK    +++   +      S++KK RVVWS ELH +FV+AVNQ+G D
Sbjct:    8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRKKLQEVRDIEGCG-------YEGGADWITRYDEAHFLGGGEDVSFGKKRKDFDFEKKLLQDESDPSSSSSKKARVVWSFELHHKFVNAVNQIGCD 216          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR10_ARATH (Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.377e-57
Identity = 117/222 (52.70%), Postives = 152/222 (68.47%), Query Frame = -2
Query:    1 DQFPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK-RWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGE---LESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 654
            DQFP G+RVL VDDD T  RIL+ +L+RC Y+VTT +QA  AL +LRE K  FD+V+SDV MPDMDGFKLLE +GLEMDLPVIM+SA      VM+G++HGACDYL+KP+R EELKNIWQHVVRK +  +NK                        S+V+ G+    KA RKR    EE++ E    ++DDP+  KKPRV+W+ ELH +F++AV+ LG+++A
Sbjct:   11 DQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRKSKLKKNK------------------------SNVSNGSGNCDKANRKRKEQYEEEEEEERGNDNDDPTAQKKPRVLWTHELHNKFLAAVDHLGVERA 208          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR18_ARATH (Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.675e-50
Identity = 114/221 (51.58%), Postives = 144/221 (65.16%), Query Frame = -2
Query:    1 DQFPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDG---ELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 654
            D+FP G+RVL VDD+ T  R LE++L RC Y+VT   ++  AL +LRE    FD+V+SDV MPD DGFKLLE IGLEMDLPVIM+SA     +VM+GI HGACDYL+KP+  +EL+NIW HVV+K     K +       E+D     S + +    VN+  +       +  S +EEDDG   E + D   T KKPRVVWS ELHQ+FVSAV QLG+DKA
Sbjct:   12 DKFPVGMRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDVEMPDTDGFKLLE-IGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHHVVKK---NIKSYAKLLPPSESDSVPSASRKRK--DKVNDSGD-------EDDSDREEDDGEGSEQDGDGSGTRKKPRVVWSQELHQKFVSAVQQLGLDKA 219          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSJ (Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 74/219 (33.79%), Postives = 123/219 (56.16%), Query Frame = -2
Query:    1 FPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKR--GSDEIEYASSVNEGTEGTFKAQRKRISAKEED-DGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 648
            +P GLRVLV+DDD +   ++E +L +C Y VTT      A+  + +     D+V+SD   P  DG  +L+ +  +  +P ++M++ G  + VM+ + +GA D+L+KP+R EEL NIWQH+ RK+  ++K +   G+LE+  H            A++ +  TE +       +     + +GE+   D     K R+ W+ +LH+QF++AVN LG DKA
Sbjct:    7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEI--TDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKA 223          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSI (Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 74/219 (33.79%), Postives = 123/219 (56.16%), Query Frame = -2
Query:    1 FPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKR--GSDEIEYASSVNEGTEGTFKAQRKRISAKEED-DGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 648
            +P GLRVLV+DDD +   ++E +L +C Y VTT      A+  + +     D+V+SD   P  DG  +L+ +  +  +P ++M++ G  + VM+ + +GA D+L+KP+R EEL NIWQH+ RK+  ++K +   G+LE+  H            A++ +  TE +       +     + +GE+   D     K R+ W+ +LH+QF++AVN LG DKA
Sbjct:    7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEI--TDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKA 223          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: APRR4_ARATH (Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.240e-31
Identity = 84/222 (37.84%), Postives = 128/222 (57.66%), Query Frame = -2
Query:    1 FPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDD------PSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 648
            FP GLRVLV D+D +   ILE+ L++  Y VT C++   A++ LR  +  FD+ +  V+  + D F+ L  IG EMDLP+I++S D  V +V + + +GA DYLIKPIR E+L+ +++H+V+K     +    +G  E+    K        +SSV + T      + KR S  E +  E +  D       S+ KK RVVW  ELHQ F++AV+ LG+++A
Sbjct:   38 FPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLVKKM--RERRSVVTGEAEKAAGEK--------SSSVGDSTIRN-PNKSKRSSCLEAEVNEEDRHDHNDRACASSAKKRRVVWDEELHQNFLNAVDFLGLERA 248          
The following BLAST results are available for this feature:
BLAST of CX308789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ARR1_ARATH2.707e-6958.80Two-component response regulator ARR1 OS=Arabidops... [more]
ARR2_ARATH8.708e-6860.18Two-component response regulator ARR2 OS=Arabidops... [more]
ARR14_ARATH4.472e-6459.64Two-component response regulator ARR14 OS=Arabidop... [more]
ARR12_ARATH1.140e-5955.45Two-component response regulator ARR12 OS=Arabidop... [more]
ARR11_ARATH8.169e-5853.70Two-component response regulator ARR11 OS=Arabidop... [more]
ARR10_ARATH2.377e-5752.70Two-component response regulator ARR10 OS=Arabidop... [more]
ARR18_ARATH3.675e-5051.58Two-component response regulator ARR18 OS=Arabidop... [more]
EHD1_ORYSJ9.095e-3333.79Two-component response regulator EHD1 OS=Oryza sat... [more]
EHD1_ORYSI9.095e-3333.79Two-component response regulator EHD1 OS=Oryza sat... [more]
APRR4_ARATH2.240e-3137.84Putative two-component response regulator-like APR... [more]

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Properties
Property NameValue
Genbank descriptionC21003G12Rv AbsLeaSub1 Citrus clementina cDNA clone C21003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308789 ID=CX308789; Name=CX308789; organism=Citrus clementina; type=EST; length=655bp
AGCCTTATCAATCCCAAGCTGATTTACAGCACTGACAAATTGCTGATGTA
GCTCTACTGACCACACTACACGTGGTTTCTTTGTCGTGGAAGGATCATCG
CTTTCCAGTTCACCATCATCTTCTTCTTTAGCACTAATCCTCTTTCTCTG
AGCTTTAAATGTTCCTTCTGTTCCTTCGTTAACAGAAGAAGCATATTCAA
TTTCATCACTTCCTCTTTTATGATGATCAGTTTCTTCCAAGCTGCCAGAA
TTTTCATGTTCTTTATTTTCATTCCACCTTTTCCGAACAACATGCTGCCA
TATATTCTTAAGCTCCTCTTCACGTATAGGCTTAATCAAGTAATCACAAG
CTCCATGTCTAATTCCCCTCATAACAGCAGATACCCTTCCATCAGCTGAC
ATCATGATAACAGGAAGATCCATTTCAAGTCCAATATGTTCAAGAAGTTT
GAAGCCATCCATATCAGGCATGTGAACGTCACTTAACACCACATCAAAAC
AGCCCTTCCTCTCCCGTAGAATATTCAAAGCAACAGCTGCCTGGGAGCAT
GTAGTTACGTTGTAGAGGCATCGACGAAGCATCTGCTCGAGAATTCGCAN
GACAGTAATGTCATCGTCAACAACAAGAACCCTTAGTCCAGCAGGAAACT
GATCA
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