CX308848

Overview
NameCX308848
Unique NameCX308848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length437
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14855 contig Ccv1_Contig14855:811..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308848 vs. ExPASy Swiss-Prot
Match: NDH_DICDI (Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.228e-24
Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    1 LEFRSVAEPVSRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHVQEIRKKPLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDF 426
            LEFRS+AEPV   +     D N + Y+ AS   I+ + + V  ++       H    F++ YDKLVI  G+   TFGIKGV+ENA FL+E++H +EIR+K +     +  P +S EER+RLL  V++GGG TG+EF+ EL+DF
Sbjct:   88 LEFRSIAEPVRTTR-----DINEFKYIQASVTSINPENNSVLVKST-----FHNEKPFEMKYDKLVIGVGSRNNTFGIKGVEENANFLKELHHAREIRQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFTSELNDF 220          
BLAST of CX308848 vs. ExPASy Swiss-Prot
Match: NDH2_YEAST (External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae GN=NDE2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.386e-18
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    1 LEFRSVAEPVSRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHVQEIRKKPLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFI 429
            +E +S+ EPV  I       P    Y+ A  + +D    +V  ++V+      E     ++YD LV++ GA+  TF I GV  NA FL+E+   Q IR K +  +  + +  +++ ERKRLL  VV+GGGPTGVEF+ EL D+I
Sbjct:  146 IEMKSIVEPVRSIARRT---PGEVHYIEAEALDVDPKAKKVMVQSVSED----EYFVSSLSYDYLVVSVGAKTTTFNIPGVYGNANFLKEIEDAQNIRMKLMKTIEQASSFPVNDPERKRLLTFVVVGGGPTGVEFAAELQDYI 282          
BLAST of CX308848 vs. ExPASy Swiss-Prot
Match: NDI1_YEAST (Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae GN=NDI1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.117e-18
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   10 RSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEP------HQFKVA---YDKLVIAAGAEPLTFGIKGVKENAYFLREVNHVQEIRKKPLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFI 429
            +S+ EP+  +  +L    N  +Y A    I+ D++ V  ++++     ++P      HQ + A   YD L+ A GAEP TFGI GV +  +FL+E+ +  EIR+    NL  +      + ER+RLL  VV+GGGPTGVE +GEL D++
Sbjct:  105 KSIIEPI--VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYV 251          
BLAST of CX308848 vs. ExPASy Swiss-Prot
Match: NDH1_YEAST (External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae GN=NDE1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.117e-18
Identity = 50/143 (34.97%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    1 LEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHVQEIRKKPLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFI 429
            +E +S+ EPV  I  +  S    ++Y A    +D +   +  ++       +  +   + YD LV+  GA+P TFG  GV E + FL+E++  QEIR K + ++  + +    + ER RLL  VV+GGGPTGVEF+ EL D++
Sbjct:  161 IELKSIVEPVRTI--ARRSHGEVHYYEAEAYDVDPENKTIKVKS----SAKNNDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAASLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYV 297          
BLAST of CX308848 vs. ExPASy Swiss-Prot
Match: NDH1_SCHPO (Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC3A11.07 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.943e-18
Identity = 51/140 (36.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   10 RSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHVQEIRKKPLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFI 429
            RS+ +P+  +    S      FY A C  +D DK  ++ +      +  E    ++ YD LV + GAE  TF I G+ E   FL+E+   Q+IR + L  L  ++   +  E R+R +H VV+GGGPTG+EF+GE++DFI
Sbjct:  143 RSIVQPIRYMLRHKSCYVK--FYEAECTDVDADKKVIHIKKTTTDGVDLEQ---EIKYDYLVCSHGAETQTFNIPGIAEYGCFLKEIWDAQKIRARILHCLEQAQFKDLPAETRRRYVHTVVVGGGPTGMEFAGEMADFI 277          
BLAST of CX308848 vs. ExPASy Swiss-Prot
Match: NDH2_SCHPO (Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC947.15c PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.446e-17
Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 LEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHVQEIRKKPLLNL-MLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFI 429
            L   S+ EP+  +      DP++  + A C  IDT   +V   T+     ++E  +  + YD LV A GA   TFGI+GV+++  FL+E    +++  +    L  +  N  +S EER RLLH  V+GGGPTG+EF+ E+ DFI
Sbjct:  139 LRLPSITEPIVALFKG-KIDPSN-IHQAECTAIDTSAKKV---TIRGTTEANEGKEAVIPYDTLVFAIGAGNQTFGIQGVRDHGCFLKEAGDAKKVFNRIFEILEQVRFNKDLSPEERARLLHITVVGGGPTGMEFAAEMQDFI 277          
The following BLAST results are available for this feature:
BLAST of CX308848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NDH_DICDI2.228e-2444.06Probable NADH dehydrogenase OS=Dictyostelium disco... [more]
NDH2_YEAST2.386e-1837.50External NADH-ubiquinone oxidoreductase 2, mitocho... [more]
NDI1_YEAST3.117e-1836.91Rotenone-insensitive NADH-ubiquinone oxidoreductas... [more]
NDH1_YEAST3.117e-1834.97External NADH-ubiquinone oxidoreductase 1, mitocho... [more]
NDH1_SCHPO6.943e-1836.43Probable NADH-ubiquinone oxidoreductase C3A11.07, ... [more]
NDH2_SCHPO3.446e-1736.81Probable NADH-ubiquinone oxidoreductase C947.15c, ... [more]
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Properties
Property NameValue
Genbank descriptionC21004E08Rv AbsLeaSub1 Citrus clementina cDNA clone C21004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308848 ID=CX308848; Name=CX308848; organism=Citrus clementina; type=EST; length=437bp
CTGGAATTCCGCTCTGTAGCTGAGCCTGTTAGTCGAATACAGACTTCATT
GTCTTCAGATCCGAATTCATACTTCTACTTGGCTTCCTGCATTGGCATTG
ACACTGATAAACATGAAGTTTATTGTGAGACAGTCAACAATGGCAAATTG
TCCCATGAGCCTCACCAATTTAAAGTTGCATATGACAAGCTAGTCATTGC
TGCTGGAGCAGAGCCTTTAACTTTTGGCATCAAGGGGGTGAAGGAAAATG
CATACTTCCTTCGTGAAGTAAATCATGTCCAAGAAATAAGGAAGAAGCCT
CTCTTAAACCTCATGCTCTCTGAAAATCCAGGCATATCAGAAGAAGAGAG
GAAACGGCTTTTACATTGTGTTGTCATTGGAGGTGGCCCTACTGGGGTGG
AGTTTAGCGGTGAATTGAGTGATTTCATCATGAGAGA
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