CX308884

Overview
NameCX308884
Unique NameCX308884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length360
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308884_ssr2 microsatellite CX308884_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.100e-37
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 3
Query:   24 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGVP 254
            MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGN EEY+DGQ +GNLGEILIRCNNVLY+RGVP
Sbjct:    1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVP 77          
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.234e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   30 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251
            ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG  SG+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75          
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.234e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   30 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251
            ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG  SG+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75          
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.234e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   30 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251
            ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG  SG+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75          
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.234e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   30 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251
            ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG  SG+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75          
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_CAEEL (Probable small nuclear ribonucleoprotein F OS=Caenorhabditis elegans GN=snr-5 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.327e-28
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   27 ATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251
            A  PVNPKPFLN+LTGK V+ KLKWGMEYKG L +VDSYMNLQL +AEEY+DG   GNLGEILIRCNNVLY+ GV
Sbjct:    3 AVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYVGGV 77          
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_DROME (Small nuclear ribonucleoprotein F OS=Drosophila melanogaster GN=DebB PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.772e-28
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   27 ATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251
            A +P+NPKPFLN LTGK V+VKLKWG EYKGFL SVD YMN+QL N EE ++G  +GNLGE+LIRCNNVLY++G+
Sbjct:    3 AGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGM 77          
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_SCHPO (Probable small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe GN=smf1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.663e-24
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 3
Query:   24 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242
            M+ +PVNPKPFL  L GK V+V+LKWG EYKG L SVDSYMNLQL NAEE VDG  +G+LGEILIRCNNVL++
Sbjct:    1 MSFVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNVLWV 73          
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_DICDI (Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum GN=snrpf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.599e-21
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 3
Query:   45 PKPFLNNLTGKTVIVKLKWG-MEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 251
            PKPFL +L GK + V+LKWG MEY+G LASVDSYMNLQL   EE++DG   G LGE+LIRCNNVL++RG+
Sbjct:    9 PKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIRCNNVLFVRGI 78          
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_NEUCR (Probable small nuclear ribonucleoprotein F OS=Neurospora crassa GN=B2O8.190 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.975e-19
Identity = 41/75 (54.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query:   24 MATIPVNPKPFLNNLTGKTVIVKLKWG-MEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLR 245
            M+ +PVNP+PFL +L    V ++LKWG  EY G L S+DSYMN+QL + +EY++ +F+G LG++LIRCNNVLY++
Sbjct:    1 MSFVPVNPRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIRCNNVLYIK 75          
The following BLAST results are available for this feature:
BLAST of CX308884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RUXF_ARATH2.100e-3793.51Probable small nuclear ribonucleoprotein F OS=Arab... [more]
RUXF_XENLA1.234e-2975.68Small nuclear ribonucleoprotein F OS=Xenopus laevi... [more]
RUXF_MOUSE1.234e-2975.68Small nuclear ribonucleoprotein F OS=Mus musculus ... [more]
RUXF_HUMAN1.234e-2975.68Small nuclear ribonucleoprotein F OS=Homo sapiens ... [more]
RUXF_BOVIN1.234e-2975.68Small nuclear ribonucleoprotein F OS=Bos taurus GN... [more]
RUXF_CAEEL2.327e-2877.33Probable small nuclear ribonucleoprotein F OS=Caen... [more]
RUXF_DROME6.772e-2870.67Small nuclear ribonucleoprotein F OS=Drosophila me... [more]
RUXF_SCHPO2.663e-2472.60Probable small nuclear ribonucleoprotein F OS=Schi... [more]
RUXF_DICDI3.599e-2167.14Small nuclear ribonucleoprotein F OS=Dictyostelium... [more]
RUXF_NEUCR1.975e-1954.67Probable small nuclear ribonucleoprotein F OS=Neur... [more]

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Properties
Property NameValue
Genbank descriptionC21005A04Rv AbsLeaSub1 Citrus clementina cDNA clone C21005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308884 ID=CX308884; Name=CX308884; organism=Citrus clementina; type=EST; length=360bp
TTTCCTTCCTTCCTCGTCCTTCGATGGCTACGATACCGGTTAACCCGAAA
CCTTTCTTGAATAACTTGACTGGAAAGACTGTCATTGTTAAACTCAAGTG
GGGAATGGAGTATAAAGGTTTCCTTGCCTCAGTGGATTCTTACATGAACT
TGCAGCTAGGAAATGCTGAAGAATATGTTGATGGACAGTTCTCTGGAAAC
CTTGGAGAGATCTTGATCAGATGCAACAATGTTCTCTATCTCCGCGGGGT
TCCAGAGGATGAAGAAATAGAGGATGCTGATCGAGACTAAGGGATTTGTT
CAAGCATTTTAGTCATCGGCTAAATAGAACTCTGTTATTTTAAGCTTAAA
CCTGCTCCAT
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