CX308889

Overview
NameCX308889
Unique NameCX308889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMP_SOLTU (Phosphoglucomutase, chloroplastic OS=Solanum tuberosum GN=PGMP PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.084e-37
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSVASKQGVRFVF+DGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKH+MDAQ ALKPLIDLALSVSKL+DFTGREKPTVIT
Sbjct:  552 GSVASKQGVRFVFSDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHDMDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 632          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMP_ARATH (Phosphoglucomutase, chloroplastic OS=Arabidopsis thaliana GN=PGMP PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 8.084e-37
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKH++DAQ ALKPLIDLALSVSKL+DFTGREKPTVIT
Sbjct:  543 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 623          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMP_PEA (Phosphoglucomutase, chloroplastic OS=Pisum sativum GN=PGMP PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.844e-36
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV SKQGVRFVFTDGSRII+RLSGTGSAGATVR+YIEQFEPDVSKH++DAQ ALKPLIDLALSVSKL+DFTGREKPTVIT
Sbjct:  546 GSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 626          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMP_BRANA (Phosphoglucomutase, chloroplastic OS=Brassica napus GN=PGMP PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.396e-35
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSVASKQGVRFVFTDGSRII+RLSG GSAGATVRIYIEQFEPDVSKH++DAQ A+KPLIDLALSVSKL++FTGREKPTVIT
Sbjct:  549 GSVASKQGVRFVFTDGSRIIYRLSGNGSAGATVRIYIEQFEPDVSKHDVDAQIAIKPLIDLALSVSKLKEFTGREKPTVIT 629          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMC_MESCR (Phosphoglucomutase, cytoplasmic OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.162e-25
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV+  QG+R++F DGSR+IFRLSGTGS GAT+R+YIEQ+E D SK   D+Q ALKPL+D+AL +SK+++F+GR +PTVIT
Sbjct:  503 GSVSKHQGIRYMFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDSSKTGRDSQEALKPLVDVALKLSKMQEFSGRSEPTVIT 583          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMC2_ARATH (Probable phosphoglucomutase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At1g70730 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 51/81 (62.96%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL +SK+++FTGR  PTVIT
Sbjct:  505 GSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKIGRDSQDALGPLVDVALKLSKMQEFTGRSSPTVIT 585          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMC1_ARATH (Probable phosphoglucomutase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g23190 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.581e-24
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GS++  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   ++Q AL PL+DLAL +SK+ +FTGR  PTVIT
Sbjct:  502 GSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKTGRESQEALSPLVDLALKLSKMEEFTGRSAPTVIT 582          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMC2_MAIZE (Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 50/81 (61.73%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL +SK++++TGR  PTVIT
Sbjct:  503 GSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYEKDSSKTGRDSQEALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMC1_MAIZE (Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.523e-24
Identity = 50/81 (61.73%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL +SK++++TGR  PTVIT
Sbjct:  503 GSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYERDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of CX308889 vs. ExPASy Swiss-Prot
Match: PGMC_BROIN (Phosphoglucomutase, cytoplasmic OS=Bromus inermis GN=PGM1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.895e-23
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  179 GSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 421
            GSV+  QG+R++F DGSR++FRLSGTGS GAT+RIYIEQ+E D SK   ++  AL PL+D+AL +SK+++ TGR  PTVIT
Sbjct:  501 GSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRIYIEQYEKDSSKTGRESSDALSPLVDVALKLSKIQELTGRSAPTVIT 581          
The following BLAST results are available for this feature:
BLAST of CX308889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGMP_SOLTU8.084e-3795.06Phosphoglucomutase, chloroplastic OS=Solanum tuber... [more]
PGMP_ARATH8.084e-3795.06Phosphoglucomutase, chloroplastic OS=Arabidopsis t... [more]
PGMP_PEA6.844e-3691.36Phosphoglucomutase, chloroplastic OS=Pisum sativum... [more]
PGMP_BRANA3.396e-3590.12Phosphoglucomutase, chloroplastic OS=Brassica napu... [more]
PGMC_MESCR4.162e-2564.20Phosphoglucomutase, cytoplasmic OS=Mesembryanthemu... [more]
PGMC2_ARATH1.211e-2462.96Probable phosphoglucomutase, cytoplasmic 2 OS=Arab... [more]
PGMC1_ARATH1.581e-2461.73Probable phosphoglucomutase, cytoplasmic 1 OS=Arab... [more]
PGMC2_MAIZE2.697e-2461.73Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2... [more]
PGMC1_MAIZE3.523e-2461.73Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2... [more]
PGMC_BROIN3.895e-2360.49Phosphoglucomutase, cytoplasmic OS=Bromus inermis ... [more]

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Properties
Property NameValue
Genbank descriptionC21005B11Rv AbsLeaSub1 Citrus clementina cDNA clone C21005B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308889 ID=CX308889; Name=CX308889; organism=Citrus clementina; type=EST; length=426bp
TTCATTTGCATTCCATGGACTTATTTATGGTCCCATGATGCCAAATTTCC
TAACCAAACCTTAACAGGAAATATTTATGATAACTCAACTCCAGCATGAA
AAGTTGGTATGCCCATCTCTCAGCTCCAACTTAAAATAACACCTGATACA
TAGAGACTAATAACGGGAGAGCTCTTTATGTGATAACTGTAGGTTTCTCC
CTTCCAGTGAAGTCCCTCAACTTTGAAACAGATAATGCCAGATCTATTAA
CGGTTTCAAGGCTGATTGTGCATCCATTTCATGTTTAGAGACATCTGGCT
CAAACTGTTCAATGTAAATTCGAACAGTTGCACCTGCTGAACCAGTTCCT
GATAAACGAAATATTATCCTTGATCCGTCTGTGAAAACAAACCGAACACC
TTGCTTTGATGCCACACTTCCGCCCG
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