CX308893

Overview
NameCX308893
Unique NameCX308893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308893_ssr13 microsatellite CX308893_ssr13:13..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig425 contig Ccv1_Contig425:1..364. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.224e-31
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 1
Query:  160 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            MSEFD  IP+AFDPFAEANAEDSGAG+KDYVH+RVQQRNGRKSLTTVQGLKK++SYNKILKDLKKEFCC
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.459e-30
Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 1
Query:  160 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            MSE D+Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCC
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.459e-30
Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 1
Query:  160 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            MSE D+Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCC
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.594e-29
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 1
Query:  160 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 71          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.594e-29
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 1
Query:  160 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 71          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.594e-29
Identity = 58/69 (84.06%), Postives = 67/69 (97.10%), Query Frame = 1
Query:  160 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            MS+ + Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY+KILKDLKKEFCC
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.550e-29
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1
Query:  160 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            MS+ D QIP+AFDPF+EANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 71          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.056e-29
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1
Query:  160 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKDLKKEFCC
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCC 71          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.470e-23
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1
Query:  160 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            M + D QIP++FDPFAEA   D+   +K+YVHIR+QQRNGRKSLTTVQGLKKE SY+KILKDLKK  CC
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  190 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F C
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69          
The following BLAST results are available for this feature:
BLAST of CX308893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SUI1_SALBA2.224e-3189.86Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_BRAOL2.459e-3086.96Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI11_ARATH2.459e-3086.96Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_ORYSJ1.594e-2987.32Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI1.594e-2987.32Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI12_ARATH1.594e-2984.06Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI1_SPOST3.550e-2985.92Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_MAIZE6.056e-2985.92Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_PIMBR8.470e-2371.01Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1_PONAB2.731e-1354.10Eukaryotic translation initiation factor 1 OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionC21005C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308893 ID=CX308893; Name=CX308893; organism=Citrus clementina; type=EST; length=368bp
GCGGGATCTCTGTCTCTCTCTCTCTCTGGCTTCTCTTGTTTCCGCTCTCG
TAAGGCAGTTTGATTCGCAATCTTCCTCTTAAGCTAAGAGCAATTTAAGT
GAATTGAAGCCAATTTCTTGCTGGTTACGGACTCTTTGACACTCCAACAA
CCAAGTTTCATGTCTGAATTTGACACCCAGATTCCATCTGCCTTTGATCC
CTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGTTCAAAAGATTATG
TGCATATTCGCGTGCAGCAACGTAATGGGAGGAAAAGCCTGACAACTGTG
CAAGGGTTGAAGAAAGAATTCAGCTACAACAAGATTCTCAAGGACCTCAA
GAAAGAGTTCTGCTGTAA
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