CX308911

Overview
NameCX308911
Unique NameCX308911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length244
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig961 contig Ccv1_Contig961:1..219. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.030e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = -3
Query:    3 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 152
            HESINNRLALVMKSGKYTLGYKTVL+SLRSSKGKLI+++NNCPPLRKSEI
Sbjct:   11 HESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = -3
Query:    3 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 152
            HESIN+RLALVMKSGK+TLGYKTVL SLRS+KGKLI+++NNCPPLRKSEI
Sbjct:   11 HESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.171e-18
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = -3
Query:    3 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 152
            HE IN+RLALVMKSGKYTLGYK+VL+SLRSSKGKLIL+S+NCPPLR+SEI
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.171e-18
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = -3
Query:    3 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 152
            HE IN+RLALVMKSGKYTLGYK+VL+SLRSSKGKLIL+S+NCPPLR+SEI
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.251e-18
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = -3
Query:    3 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 152
            HE IN+RLALVMKSGKYTLGYK+VL+SLR SKGKLIL+S NCPPLR+SEI
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_WHEAT (60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            E+INN+L LVMKSGKYTLGYKTVL++LRSS GKLI+L+NNCPPLRKSEI
Sbjct:   12 ENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_ORYSJ (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.985e-17
Identity = 39/49 (79.59%), Postives = 47/49 (95.92%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ++INN+L LVMKSGKYTLGYKTVLR+LR+SK KL+++SNNCPPLRKSEI
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_MAIZE (60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16
Identity = 38/49 (77.55%), Postives = 47/49 (95.92%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ++INN+L LVMKSGKYTLGYKTVLR+LR+SK KL++++NNCPPLRKSEI
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_RAT (60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.587e-13
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_OPHHA (60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.587e-13
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
The following BLAST results are available for this feature:
BLAST of CX308911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL30_LUPLU3.030e-2092.0060S ribosomal protein L30 OS=Lupinus luteus GN=RPL... [more]
RL30_EUPES1.273e-1886.0060S ribosomal protein L30 OS=Euphorbia esula GN=RP... [more]
RL303_ARATH2.171e-1886.0060S ribosomal protein L30-3 OS=Arabidopsis thalian... [more]
RL301_ARATH2.171e-1886.00Putative 60S ribosomal protein L30-1 OS=Arabidopsi... [more]
RL302_ARATH8.251e-1884.0060S ribosomal protein L30-2 OS=Arabidopsis thalian... [more]
RL30_WHEAT4.095e-1783.6760S ribosomal protein L30 OS=Triticum aestivum PE=... [more]
RL30_ORYSJ6.985e-1779.5960S ribosomal protein L30 OS=Oryza sativa subsp. j... [more]
RL30_MAIZE1.556e-1677.5560S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=... [more]
RL30_RAT3.587e-1369.3960S ribosomal protein L30 OS=Rattus norvegicus GN=... [more]
RL30_OPHHA3.587e-1369.3960S ribosomal protein L30 OS=Ophiophagus hannah GN... [more]

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Properties
Property NameValue
Genbank descriptionC21005F02Rv AbsLeaSub1 Citrus clementina cDNA clone C21005F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308911 ID=CX308911; Name=CX308911; organism=Citrus clementina; type=EST; length=244bp
TCAATCTCTGATTTTCTCAACGGTGGGCAATTATTTGACAAAAGAATCAA
CTTTCCCTTAGAGCTTCTGAGAGATCGAAGAACAGTTTTGTAACCAAGAG
TGTATTTGCCGCTCTTCATCACAAGAGCAAGCCTGTTGTTGATGCTCTCA
TGAGTCTTCTTCGTCTTCTTGCTTGTGACCATTTTCGACTGTTTGGTTGC
ACCAAAAAGACTTTGCGGGAGGCGGCAAAGTAACAAACGACCCG
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