CX308916

Overview
NameCX308916
Unique NameCX308916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:20..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.258e-30
Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = -1
Query:    3 FRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAY--NALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNE 308
            F  PTMA+  L +  VSSA+DMSI+SYD+ H   ++  R++ EVM ++EAW VKHGKA   N+L EK++RFEIFKDNLRF+DEHN +N +Y++GL RFADLTN+
Sbjct:    3 FLKPTMAILFLAMVAVSSAVDMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKAQSQNSLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTND 106          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.266e-22
Identity = 57/106 (53.77%), Postives = 80/106 (75.47%), Query Frame = -1
Query:    3 MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSE-NRTYKVGLNRFADLTNE 317
            MGL +S  ++M LLF  T+   L +S+        +K+ + RT+DEV  M+E+W +K+GK+YN+LGE E+RFEIFK+ LRFIDEHN++ NR+YKVGLN+FADLT+E
Sbjct:    1 MGLPKS-FVSMSLLFFSTL---LILSLA-----FNAKNLTQRTNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDE 97          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 3.266e-22
Identity = 57/106 (53.77%), Postives = 80/106 (75.47%), Query Frame = -1
Query:    3 MGLFRSPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSE-NRTYKVGLNRFADLTNE 317
            MGL +S  ++M LLF  T+   L +S+        +K+ + RT+DEV  M+E+W +K+GK+YN+LGE E+RFEIFK+ LRFIDEHN++ NR+YKVGLN+FADLT+E
Sbjct:    1 MGLPKS-FVSMSLLFFSTL---LILSLA-----FNAKNLTQRTNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDE 97          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.893e-20
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = -1
Query:    9 MGLFRSPTMAMFLLFLFTVS--SALDMSIVSYDKTHESKSSSWRT----DDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLT 317
            MG  +S  M +FLL L   S  +A+DMS+VS +  H   +   R     D E   MFE+W VKHGK Y+++ EKE+R  IF+DNLRFI   N+EN +Y++GLNRFADL+
Sbjct:    1 MGYAKS-AMLIFLLALVIASCATAMDMSVVSSNDNHHVTAGPGRRQGIFDAEATLMFESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFADLS 108          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.736e-18
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = -1
Query:    3 AMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNS-ENRTYKVGLNRFADLTNE 290
            A+ +L +  +SS+L ++         +++   R + EV  M+E W V++ K YN LGEKE+RF+IFKDNL+F+DEHNS  +RT++VGL RFADLTNE
Sbjct:   12 ALVILSVLLLSSSLGVA---------TETEIERNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFADLTNE 99          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.373e-18
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = -1
Query:    3 SPTMAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSEN----RTYKVGLNRFADLTNE 302
            S  +A   L L    +A DMSIVSY +         R+++E   ++  W  +HGK+YNA+GE+E+R+  F+DNLR+IDEHN+       ++++GLNRFADLTNE
Sbjct:    4 SMALAAAALLLLLSLAAADMSIVSYGE---------RSEEEARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNE 98          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.324e-18
Identity = 45/104 (43.27%), Postives = 69/104 (66.35%), Query Frame = -1
Query:    9 MGLFRSPTMAMFL-LFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLT 317
            MG  +S  + + + + + + ++A+DMS+VSYD  +   S     D E   +FE+W VKHGK Y ++ EKE+R  IF+DNLRFI+  N+EN +Y++GL  FADL+
Sbjct:    1 MGSAKSAMLILLVAMVIASCATAIDMSVVSYDDNNRLHSVF---DAEASLIFESWMVKHGKVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFADLS 101          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.854e-17
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = -1
Query:    9 LDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSE-NRTYKVGLNRFADLT 251
            L + ++S      + + S R + EV+ M+E W V++GK YN LGEKE+RF+IFKDNL+ I+EHNS+ NR+Y+ GLN+F+DLT
Sbjct:   13 LSVLLISISLGVVTATESQRNEGEVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKFSDLT 94          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.203e-17
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = -1
Query:    3 MAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYN----ALGEKEKRFEIFKDNLRFIDEHNSENR--TYKVGLNRFADLTNE 293
            +++ LL++    ++ D SI++ D         WRTD+EV  ++  W  +HGK  N     + +++KRF IFKDNLRFID HN +N+  TYK+GL +F DLTN+
Sbjct:    8 LSLLLLYVVVSLASGDESIIN-DHLQLPSDGKWRTDEEVRSIYLQWSAEHGKTNNNNNGIINDQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTDLTND 109          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = -1
Query:    3 FRSPTMAMFLLFLFTVSSAL-------DMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNE 308
            F +P+++ F L +   +SAL       D SIV Y   H + +      D+++ +FE+W  +H KAY ++ EK  RFE+F++NL  ID+ N+E  +Y +GLN FADLT+E
Sbjct:    3 FSAPSLSKFSLLVAISASALLCCAFARDFSIVGYTPEHLTNT------DKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHE 105          
The following BLAST results are available for this feature:
BLAST of CX308916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RD21A_ARATH7.258e-3058.65Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ACTN_ACTDE3.266e-2253.77Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
ACTN_ACTCH3.266e-2253.77Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CPR4_ARATH8.893e-2048.62Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CPR1_ARATH3.736e-1848.45Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
ORYA_ORYSJ6.373e-1844.23Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CPR3_ARATH8.324e-1843.27Probable cysteine proteinase At4g11310 OS=Arabidop... [more]
CPR2_ARATH1.854e-1751.22Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
GCP1_ARATH9.203e-1741.75Germination-specific cysteine protease 1 OS=Arabid... [more]
XCP1_ARATH1.017e-1539.45Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC21005G03Rv AbsLeaSub1 Citrus clementina cDNA clone C21005G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308916 ID=CX308916; Name=CX308916; organism=Citrus clementina; type=EST; length=383bp
TCCTCGTTGGTCAAATCAGCAAACCGGTTCAACCCAACCTTGTAGGTCCG
GTTCTCTGAGTTATGTTCATCAATAAACCTAAGATTGTCCTTAAAGATCT
CAAACCTTTTCTCTTTTTCACCCAAAGCGTTATAAGCCTTGCCATGCTTC
ACAAACCAGGCCTCGAACATACCCATAACCTCATCGTCGGTCCTCCAGCT
GCTAGATTTTGACTCATGGGTTTTATCATAAGATACAATCGACATGTCCA
AGGCAGATGATACAGTGAAGAGAAAAAGTAAAAACATGGCCATGGTTGGT
GATCTGAACAAACCCATCTTTGGAGAAAAGAGCTTTTTTTTTCTTTTTGG
GAGAAGAAGATGGATTGATGAGGCAGAGTCCCG
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