CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.693e-32
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 2
Query:   74 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            MAGY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT+SL IDNKV+KAQIWDTAGQ
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQ 72          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.336e-31
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 2
Query:   74 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            MAGYK D+EYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID KV+KAQIWDTAGQ
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQ 72          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.078e-31
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 2
Query:   74 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            MAGY+ D+EYDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATRSL +D+KV+KAQIWDTAGQ
Sbjct:    1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQ 72          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.663e-31
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 2
Query:   74 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            MAGY+ DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++ +++ KVVKAQIWDTAGQ
Sbjct:    1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQ 72          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.478e-30
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 2
Query:   74 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            M GY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++L +D KVVKAQIWDTAGQ
Sbjct:    1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQ 72          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.478e-30
Identity = 62/72 (86.11%), Postives = 70/72 (97.22%), Query Frame = 2
Query:   74 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            MAGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR+L++D KVVKAQIWDTAGQ
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQ 72          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 2
Query:   80 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            GY+ +++YDYLFKLVLIGDSGVGKSNLLSRF++NEFNLESKSTIGVEFATRS+R+D+K+VKAQIWDTAGQ
Sbjct:    4 GYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQ 73          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.134e-29
Identity = 60/71 (84.51%), Postives = 69/71 (97.18%), Query Frame = 2
Query:   77 AGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            AGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSL++D KVVKAQIWDTAGQ
Sbjct:    3 AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQ 73          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.383e-28
Identity = 57/69 (82.61%), Postives = 67/69 (97.10%), Query Frame = 2
Query:   83 YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +KPD++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    3 HKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 71          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
YPT3_NICPL2.693e-3291.67Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11E_LOTJA1.336e-3190.28Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1C_ARATH5.078e-3187.50Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAA1A_ARATH8.663e-3187.50Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11D_LOTJA1.478e-3087.50Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH1.478e-3086.11Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11B_TOBAC1.251e-2984.29Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ2.134e-2984.51Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPTC6_CHLRE1.383e-2882.61Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11B_RAT6.864e-2886.36Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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